Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 172 7e-38 seq8 125 9e-24 seq7 102 1e-16 >seq6 Length=1458149 Score = 172 bits (190), Expect = 7e-38 Identities = 676/1049 (64%), Gaps = 33/1049 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||||| || | ||||| |||||||| || |||| || ||| Sbjct 934574 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 934633 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 | ||||| ||| || |||||| | | |||| |||||| | || ||||||||| Sbjct 934634 ATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTC 934693 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || |||||||| || || |||||||| |||||||| |||| | ||||| ||| Sbjct 934694 AACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGAAGGACGAC 934753 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 || ||| |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 934754 TCGATCGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGT 934813 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGACAA 75509 || ||||| | ||||| || | | | |||| | |||||| ||| || || | Sbjct 934814 GGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATCGCCGGAACCA 934871 Query 75510 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 75569 | ||| | || | |||||| | || ||||| || | | |||| || || || || | Sbjct 934872 ACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACG 934931 Query 75570 TAAATCAAGCGGGGC----GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 | | | || | ||| ||| || || | || ||||| | || || |||||| Sbjct 934932 TCGA-CCAGGGTGGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 934990 Query 75626 GCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGT 75685 || || | | || |||||||| | || ||||| || | || |||| ||| Sbjct 934991 GCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGCGCG 935050 Query 75686 AGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGT 75745 | || || || | | || ||| | || ||||| ||||||||||| || |||| | Sbjct 935051 CGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 935110 Query 75746 GGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACG--CGGTGGGTG 75803 ||| | ||| | || | || || | | || || ||||| |||||| | | | | Sbjct 935111 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 935168 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGA---AGAGG---AGGGTAGAGCCAATGCGA 75857 |||||||||| |||| ||| ||||| || |||| ||||| | ||| || Sbjct 935169 AGGAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCG---CAA---GA 935222 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 | | | || | | || | | ||| || || || | | ||||| |||||||| Sbjct 935223 CCAT-CAAGGCCCAGAAGCTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACTGGTGGC 935281 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || | || || |||||||| ||| ||| ||| |||||| || | |||| || Sbjct 935282 CCCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACT 935341 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 |||||| || || || ||||| || || | |||||| | | || ||| || Sbjct 935342 ATCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCC 935401 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGAAGAGACTCGCACT 76093 || ||||| | || || || |||||||| || ||| | |||| | | |||| Sbjct 935402 GTCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTCGACTTTGAAAACA---GCACC 935458 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 | ||| | | || ||||| || ||||| ||| | |||||||| || || || | ||| Sbjct 935459 TATGACTTCAAGAAGCTTCACGAGATCACCAAGGTCGTTACCAAGAACCTTGACTGCGTC 935518 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || | || | || |||||| || || ||| || || ||||| || | || Sbjct 935519 ATCTCGCGCAACTACTACCCCGTTCAGGAGGCCAAAAACTCGAACATGCGCCATCGCCCC 935578 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGA 76242 | ||| | ||||| || ||||| || || Sbjct 935579 GTCGGTCTCGGTGTCCAGGGTCTTGCCGA 935607 >seq8 Length=1386445 Score = 125 bits (138), Expect = 9e-24 Identities = 198/277 (71%), Gaps = 14/277 (5%) Strand=Plus/Minus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGGTT 65147 || ||||||||||||||||| ||||||||||| || ||||| ||| || || | ||| | Sbjct 725231 GCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATT-TGCTGCCATCTTCTGGCT 725173 Query 65148 GAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGA 65207 |||||||| |||||||||| ||||| ||||| ||||| ||||| || |||||||| Sbjct 725172 CAAGAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCTCGAGATGA 725113 Query 65208 GGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAA--GACTTTGCGTAATAGACC---- 65261 |||| | ||| || |||| |||| ||| || | | | | | | ||| Sbjct 725112 GGGTATTCACACCGACTTTG-CGTG--CCTCCTCTATGGGCAT---CTCAAGCACCGCTG 725059 Query 65262 CACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTTCAT 65321 | || ||| || || ||||||||| || |||||||| || ||||| | |||| | Sbjct 725058 CTCTGACGAGGAAGTCTACACCATCGTGACCGAAGCGGTTGAAATAGAGAAGGAGTTCCT 724999 Query 65322 CTTGGACGCACTCCCATGTAATCTCATCGGTATGAAC 65358 ||||| ||||||||| || |||||||| ||| Sbjct 724998 GACAGACGCGCTCCCATGTGCGCTTATCGGTATCAAC 724962 >seq7 Length=1425097 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || || || |||||||||| | ||||| | ||| || | Sbjct 37280 GCCATCGAGACCATCCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCGTTGGATTTCC 37339 Query 65056 -ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 || | |||| ||||| || |||||||| ||||||| || || ||||||||||| Sbjct 37340 GACGAGCGCTCG-TCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGGTATCTT 37398 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 ||||| || || || | | || | ||| | |||||||| || |||||||| ||||| Sbjct 37399 TTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCT 37458 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 ||||| || || || || || || || |||||||||||| || |||||| Sbjct 37459 CACTTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCC 37513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569145115680