Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 134 4e-26 seq18 120 9e-22 >seq6 Length=1458149 Score = 134 bits (148), Expect = 4e-26 Identities = 548/863 (63%), Gaps = 3/863 (0%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| ||| ||||| || |||||| ||||| | | || ||||||||| || | | Sbjct 935370 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 935311 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || ||| |||||||| || ||| | ||| || ||||| |||| || || || || Sbjct 935310 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATG 935251 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 | |||||| | |||| || || |||| |||| || ||| || ||| Sbjct 935250 GCGAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGCTCGTACTTC 935191 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 ||||| || | ||||| || | || || |||||||||| ||||| Sbjct 935190 TGGTACAGGGTCTCAAACTCCTCCGAGTGAACGTCGGCAAGACCAGGGCACTCGGCGGGG 935131 Query 155880 CAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAA 155939 || | || | ||| | | ||||||| ||| || | ||| |||| Sbjct 935130 CACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGGACCCAG 935071 Query 155940 ATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCT 155999 | ||| ||||| ||||| | || |||||| | ||||| ||||| || || || Sbjct 935070 AGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGGTCA 935011 Query 156000 AAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTC 156059 | ||| || || || | ||| ||||| || || || ||||| |||| | | Sbjct 935010 AGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGGCGC 934951 Query 156060 TTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATA 156116 ||| |||||||| || || || || || ||| | | || ||| ||||| || | | Sbjct 934950 TTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCATGGGGACA 934891 Query 156117 ATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGA 156176 ||||| ||||| || ||||||||| || | ||| || | |||| || ||| Sbjct 934890 ATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACGAATGTTGTGA 934831 Query 156177 ATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTG 156236 || || || ||||| ||||| | || || || || ||||| ||| | || | | Sbjct 934830 ATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCG 934771 Query 156237 AAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGT 156296 | || || || || || || || | ||| | | || ||||||| | ||||| Sbjct 934770 TAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGACATCTGAGGG 934711 Query 156297 CGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATA 156356 | || || ||||||||||| || || || | || ||| | || || | ||||| Sbjct 934710 TGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGCTCGGACATG 934651 Query 156357 TAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTC 156416 | ||| ||||| | | ||| || | || ||||| |||| ||| || || | | Sbjct 934650 AGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATGGAAACACGC 934591 Query 156417 ATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGT 156476 || ||| ||||| |||||||| | | | || ||||| |||| || |||| ||| Sbjct 934590 ATAATCATGTGCTGCGGACGCTCGGCCACCTTGCCGTCAATGCGCAAGAGATATGAGCGC 934531 Query 156477 TCCAGAGTTTTAAACCCGAAATA 156499 || || || || || ||||| || Sbjct 934530 TCGAGGGTCTTGAAACCGAAGTA 934508 >seq18 Length=276791 Score = 120 bits (132), Expect = 9e-22 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630 ||| ||||| ||||| | |||||||| ||||||||||| | ||| || || || Sbjct 4997 GTCCTCCATGGCCTTGACGAGTCGACGCTGGATATAACCAGTCTCGGCTGTCTTGACCGC 5056 Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690 || || || ||||| |||||||||||||||| |||||||| | ||||| || || Sbjct 5057 AGTGTCGATGAGACCCTCACGACCACCCATAGCGTGGAAGAAGAACTCTTGGGGGGTAAG 5116 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| |||| ||||||||||||| ||| || || |||| ||||| Sbjct 5117 ACCACGCAGGTACGAGTTCTCGACGAAACCACGCGACTCAGGTCCATAGTCGTCCTTGGA 5176 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || || ||||| | || ||||| | || ||||||||||| || || | || Sbjct 5177 GAAATGCGGGAGGGTGCGGTGGCGGAAGCCGAACGGAATACGCTTTCCTTCGACAATTTG 5236 Query 302811 CTGTCCCAGGCA---CGAAATCATCTGCGAAATATT 302843 ||| || | || ||| ||| |||||||| || Sbjct 5237 CTGGCCGACACATCCCGA---CATTTGCGAAATGTT 5269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816449682557