Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq7 132 5e-26 seq10 120 3e-22 seq1 116 4e-21 seq8 87.8 2e-12 >seq7 Length=1425097 Score = 132 bits (146), Expect = 5e-26 Identities = 154/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| ||||| || || || || | | | | |||| |||||||||| Sbjct 29736 ATGAAGGGTCGACTCCTTCTGGATGTTATAGTC--CGAGAGGGTACGACCGTCCTCGAGC 29679 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| |||||||||||||| |||||||| |||||||| ||| Sbjct 29678 TGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATC 29619 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | | ||| || || | ||||| ||| ||||| Sbjct 29618 TTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCA 29559 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || |||||||||||||| Sbjct 29558 GTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 129 bits (142), Expect = 6e-25 Identities = 149/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || | | | | |||| ||| || |||||||||| Sbjct 29957 GTGGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGACCGTCTTCAAGCTGCTTGC 29900 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| |||||||||||||| || ||||| |||||||| ||||| || Sbjct 29899 CGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCT 29840 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | ||| || |||| ||||| ||| ||||| || |||| Sbjct 29839 TCACGTTGTCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGAG 29780 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 29779 TCTTGACGAAAATCTGCAT 29761 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| ||| | ||| ||||||||||||||||||| Sbjct 30185 GTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCC 30126 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | ||||| |||||||||||||| || ||||| |||||||| |||||| ||| Sbjct 30125 GCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTC 30066 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || || | |||| || ||||| || || || Sbjct 30065 ACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTC 30006 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 30005 TTGACGAAAATCTGCAT 29989 Score = 116 bits (128), Expect = 4e-21 Identities = 327/494 (66%), Gaps = 15/494 (3%) Strand=Plus/Minus Query 120364 ACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAAC 120423 ||||| ||| || ||||| | ||||| | || || || | | |||||| ||||| Sbjct 37791 ACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAGATCATCTCCATAAAGTCGAAG 37732 Query 120424 GGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGT-ACGAGCAGTCGGTCCGCTAC 120482 || || ||| ||| || || | | | |||| | |||||||| ||||| || || Sbjct 37731 GGATTCGTCGAGTTGTAG-ATCTTGTCGTTGCCAAGAGCGACGAGCAGACGGTCGGCGAC 37673 Query 120483 AAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACG 120541 ||||||||||| | ||||||| ||| | |||||||| || | | || ||| || | || Sbjct 37672 GAACTCAATGTATTGGCACATGAGACCG-GCGTTCATACCGATGAGCGACACGGGGAGCG 37614 Query 120542 CCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGAGCATAGTGT 120601 || || | ||||||| ||||| | || ||||| || || | | || Sbjct 37613 CCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGCGGATAATCTT---CTCAATGA 37557 Query 120602 GGCCGGGCATCTTGTGTTCGATGC--GCGTTCGGTAGTA--CAGGCACGCAAAGTCCGTG 120657 || ||| || | ||| | | | | ||| | ||| || |||||||| ||| Sbjct 37556 GGTTGGGG----TGCGGGCGACGGCGGAGATGGGTGAAAAGCAGACAGGCAAAGTCGGTG 37501 Query 120658 TGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCT 120717 || || |||||||| ||||| || ||||||||| || || ||||||||||||| ||| Sbjct 37500 TGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCCGGGCATGAGGCCA 37441 Query 120718 TTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATG 120777 | |||||| |||| || | |||||| ||| || || || | ||||| ||| | Sbjct 37440 CGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGATACCCTCGACGGCG 37381 Query 120778 GCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCC 120837 || || || | | |||||| || || | || || | | ||||| | |||| Sbjct 37380 GCGAACGCAATGAGGCGCTCAGCAAAGGACGAGCGCTCGTCGGAAATCCAACGGAGGGCC 37321 Query 120838 CACTCGGCCTTTTT 120851 || |||||||| || Sbjct 37320 CAGTCGGCCTTCTT 37307 Score = 111 bits (122), Expect = 2e-19 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| ||||| || ||||| || | | | | |||| |||||||||| Sbjct 29227 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC--CGAGAGGGTACGACCGTCCTCGAGC 29170 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| |||||||||||||| |||||||| |||||||| ||| Sbjct 29169 TGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATC 29110 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | | ||| || || | ||||| ||| ||||| Sbjct 29109 TTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCC 29050 Query 133635 GTCAGAGTTTTTAC 133648 || || || || || Sbjct 29049 GTAAGGGTCTTGAC 29036 Score = 104 bits (114), Expect = 2e-17 Identities = 135/185 (73%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGC 133514 ||| | ||| ||||| || || || ||||| || | | | | |||| |||||||||| Sbjct 29508 ATGAAGGGTCGACTCCTTTTGGATGTTGTAGTC--CGAAAGGGTACGACCGTCCTCGAGC 29451 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | ||||| |||||||||||||| |||||||| |||||||| |||| Sbjct 29450 TGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 29391 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| | | ||| || || | |||| || |||||| Sbjct 29390 TTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTCTTGCCG 29331 Query 133635 GTCAG 133639 || || Sbjct 29330 GTAAG 29326 >seq10 Length=927812 Score = 120 bits (132), Expect = 3e-22 Identities = 138/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 77098 GGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 77039 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 77038 GGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 76979 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| |||| ||||| || ||||| || || || Sbjct 76978 GACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 76919 Query 133643 TTTTAC 133648 || || Sbjct 76918 CTTGAC 76913 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/140 (74%), Gaps = 5/140 (4%) Strand=Plus/Plus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGAC---ACCAGCAACGGCTGCACCTCCGCCGG 116528 ||||||||||||||| ||||||||||| ||| ||| || ||||||| |||||| Sbjct 404330 GCACGGCTTCCACGTCCACGAGTTTGGAGACGTTACCGCTGCCGACTGCACCAGCGCCGG 404389 Query 116529 CGAACACTTCAACCCCACCGGCCAGGAC-CACGGCGCGCCCAACGCCGCCGTTCGTCACG 116587 | ||||| ||||| | || ||| |||||||||||| | | | || || || | Sbjct 404390 CCCGCACTTTAACCCGTTC-AACATGACGCACGGCGCGCCCGAGGACAAGGTCCGCCATG 404448 Query 116588 TCGGTGACCTGGGCAACATT 116607 |||| ||||| ||||||||| Sbjct 404449 TCGGCGACCTCGGCAACATT 404468 >seq1 Length=3521688 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 |||||||||||||||||| ||| | ||||| ||||||||||| || |||||||| ||||| Sbjct 2364828 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTT 2364887 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | |||||| | | ||| || |||| ||||| Sbjct 2364888 GTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 2364947 Query 133625 GGTTTTGCCGGTCAGAGTTTTTAC 133648 ||| |||||||| || || || || Sbjct 2364948 GGTCTTGCCGGTGAGGGTCTTAAC 2364971 >seq8 Length=1386445 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 |||||||||||||| ||||| | ||||| || || || || ||||| || || || Sbjct 725086 AGGCACGCAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTCGAGAATGTA 725145 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||| |||||| || | |||||| |||| ||||| ||||| ||||| ||| Sbjct 725146 AGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGATCCCGAGAAG 725205 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCA 120790 || | ||||||||| |||||||||| || Sbjct 725206 AAGATGCCCTCCACACACGCAAAGGCGATCA 725236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420431391640