Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6 149 9e-30 seq7 145 1e-28 seq12 127 3e-23 seq11 93.3 6e-13 seq18 86.0 9e-11 >seq6 Length=1458149 Score = 149 bits (164), Expect = 9e-30 Identities = 211/292 (72%), Gaps = 6/292 (2%) Strand=Plus/Plus Query 259894 CATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGC 259952 |||||| ||| | ||||| ||| || | || || ||||| || || || || || | Sbjct 934651 CATGTCCGAGCGCTACTTCAC-TCACGCTTCCCCGACCCTCTTCAACGCTGGTACTCCCC 934709 Query 259953 GCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCT 260012 ||| |||| ||||||||||| || | | ||||||| ||| |||||||| ||||||| Sbjct 934710 ACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGAAGGACGACTCGATCGACGGCATCT 934769 Query 260013 ATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 | ||||| |||||| ||||| | ||||||||| | || || ||||| ||| | || Sbjct 934770 ACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGTGGCATTGGTCT--CCA 934827 Query 260073 CA--CACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGG 260130 || ||||| | || ||| |||| | ||| | || || |||||||| | |||||||| Sbjct 934828 CATTCACAACATTCGTGCCAAGGGCTCGTACATCGCCGGAACCAACGGTTACTCCAACGG 934887 Query 260131 CCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 |||| |||||||| || | | ||| || || || |||||||||||| Sbjct 934888 TATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACGTCGACCAG 934939 Score = 87.8 bits (96), Expect = 3e-11 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 262092 AGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACA 262151 || |||||| ||||| | | |||||| | |||||| || |||| ||| |||||| Sbjct 935238 AGCTCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACTGGTGGCCCCTTCATCCTCTACA 935297 Query 262152 AGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAACC 262211 ||||||| | ||||| | ||||||||| |||||||||| | | | |||||| Sbjct 935298 AGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTATCAAGTCGTCCAACC 935357 Query 262212 TGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAGGCAAGTGTGTGCAACCTCTCGA 262271 | ||||| |||||| || ||| || || ||| ||||| || |||||||| | Sbjct 935358 TCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCGTCTGCAACCTTGCCT 935417 Query 262272 GCGTGGCCCTGCCCAAGTTTGTC 262294 | | ||||| ||| ||| ||| Sbjct 935418 CCATTGCCCTTCCCGCGTTCGTC 935440 Score = 87.8 bits (96), Expect = 3e-11 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 263233 GCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGAC 263292 || || ||||| | ||| | |||||||| |||||||||||| | |||| | || Sbjct 936161 GCCGCTGACCGTGGTGCCTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAAC 936220 Query 263293 CCGACGGCCGAG-AGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGAC 263351 || || | | ||| | || || |||||| ||| | ||| || || || ||||| Sbjct 936221 CCTTCGTTCTCGCAGCTT-ACTTCCATGCACTTCTACGGCTGGAAGCGTGGTCTTAAGAC 936279 Query 263352 TGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||||||||||| || || ||||| || | |||||||||||||| |||||||| || Sbjct 936280 CGGCATGTACTACCTCCGTACCCGCCCGTCGGCCAACGCCATTCAGTTCACCGTTGA 936336 >seq7 Length=1425097 Score = 145 bits (160), Expect = 1e-28 Identities = 190/258 (74%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||| ||| |||||||||| |||| || | ||||| | | |||| |||| || | Sbjct 37563 AGAAGATTATCCGCGAGGCCGTCAAGATTGAACAGGAGTTCCTTACCGAGGCGCTCCCCG 37622 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || |||||||||| ||||||||| ||||||||||| ||||||| | || |||||||| Sbjct 37623 TGTCGCTCATCGGTATGAACGCCGGT-CTCATGTGCCAATACATTG-AGTTCGTCGCCGA 37680 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 ||| ||||||| || || ||| | || ||| |||| || | || || ||| | Sbjct 37681 CCGTCTGCTCGTCGCTCTTGGCAAC-GACAAGATCTACAACTCGACGAATCCCTTCGACT 37739 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGGC-GAGT 1456756 |||||| ||||||| || | |||||| ||||||| |||||| |||||| | | | Sbjct 37740 TTATGGAGATGATCTCTCTGCAAGGCAAGGCCAACTTCTTCGAGTCGCGCGTGTCGGCCT 37799 Query 1456757 ACGCCAAGGCCGGCGTCA 1456774 | |||||| | || |||| Sbjct 37800 ATGCCAAGTCTGGTGTCA 37817 Score = 129 bits (142), Expect = 8e-24 Identities = 191/266 (72%), Gaps = 11/266 (4%) Strand=Plus/Plus Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC----CC 1456070 || ||||| ||||| || |||||||| ||||| |||||||||||| | ||| || Sbjct 37199 GAGAACATTCACTCCGAGACCTACTCTCTCCTCATCGACACCTACATTCGTGACAACGCC 37258 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || | | ||||||| |||||||| || | || | | | ||| ||||| Sbjct 37259 CGCCG----GCAGTACCTCTTCAAGGCCATCGAGACCATCCCCTGCATCAAGAAGAAGGC 37314 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 ||||||||| | ||||| | | ||| | |||| | |||||| ||||| ||| | Sbjct 37315 CGACTGGGCCCTCCGTTGGATTTCCGACGAGCG-CTCGTC-CTTTGCTGAGCGCCTCATT 37372 Query 1456191 GGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | || |||| ||||||||| ||||||||||| ||| || | | ||||| |||||| Sbjct 37373 GCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCGTTTGCCTCGATCTTCTGGCTC 37432 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||| |||||||||||||| || Sbjct 37433 AAGAAGCGTGGCCTCATGCCCGGCCT 37458 >seq12 Length=801670 Score = 127 bits (140), Expect = 3e-23 Identities = 179/248 (72%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 724897 CGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCAT 724956 ||||||| ||| || |||||||| ||||||||||| |||||| || | | || Sbjct 461291 CGTACTCTACCTACATTTACAAGGTCCTCAAGCAGGTCCACCCCGACACTGGT-----AT 461237 Query 724957 CCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG 725016 | | |||||| | ||| | || | ||||||||||| ||||| |||| ||||| | Sbjct 461236 CAGC-AACAAGGCGATGGCCATTCTCAACTCGTTTGTGTCGGACATTTTCGAGCGCATTG 461178 Query 725017 GCACCGAGGCCGGTCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGA 725074 ||||||||| ||| || ||| | |||| | ||| ||| ||| |||| || Sbjct 461177 CCACCGAGGC--GTCCAAGCTCGCGTCGTACAACCACCGCTCCACCATCTCGTCGCGTGA 461120 Query 725075 GATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGA 725134 ||||||||||||||| ||||| ||| | | ||| || || | | ||||||| ||||||| Sbjct 461119 GATCCAGACCGCCGTCCGCCTCATCCTCCCCGGTGAGCTCTCGAAGCACGCCATCTCCGA 461060 Query 725135 GGGCACCA 725142 |||||||| Sbjct 461059 GGGCACCA 461052 >seq11 Length=847397 Score = 93.3 bits (102), Expect = 6e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 2133558 GACGAGATGGTGACGGTGCGCGATATTGACTTTTTCTCCATGTGCGAGCACCACCTGCTG 2133617 ||||||||||| | |||||||| |||||| | | ||| |||||||||||||| || || Sbjct 346265 GACGAGATGGTCATTGTGCGCGACATTGACGTGTACTCGCTGTGCGAGCACCACATGGTG 346206 Query 2133618 CCCTTTATCGGCAAGGCCCACGTGGGCTACCTGCCC-GCGGGCAAGATCATCGGTCTGAG 2133676 ||||| | ||||||| | | || ||| | ||| | ||| | | | ||||| || Sbjct 346205 CCCTTCACCGGCAAGATTTCCATCGGATACATCCCCAACCAGCACG-TGCTTGGTCTCAG 346147 Query 2133677 CAAGATCCCGCGCATCGTCGACATGTTTTCCGACCGCTTCCAAGTACAGGAGGCACTCAC 2133736 |||| || |||| || | ||| | |||| | |||| |||| || |||||| ||||| Sbjct 346146 CAAGCTCGCGCGTATTGCCGAAACGTTTGCTCGCCGCCTCCAGGTCCAGGAGCGTCTCAC 346087 >seq18 Length=276791 Score = 86.0 bits (94), Expect = 9e-11 Identities = 117/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 1818076 AGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGAT-CTCATAGGGCACGCCCACC 1818134 |||||||||||||||| || | ||||| || || | || || |||| ||||| ||| Sbjct 6441 AGGGCGTCACGCGCTCCGGGTACGTGAGGATCATGGCAATACTACGAGGG-ACGCCGACC 6499 Query 1818135 TCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGC 1818194 | ||| | | || | |||||| | || |||| ||||||| ||||| ||| ||| Sbjct 6500 TGGTCGAGCTGGATATTGGGGTCACCCGTAATAACGGTACGCGCGGAAAAGTCGACACGC 6559 Query 1818195 TTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTT 1818235 ||||||||| || || || | | ||||||||||||||| Sbjct 6560 TTGCCCATGAGGTTTCCACGAAGACGGCCCTCCTTGCCCTT 6600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177805316437882