Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq10 91.5 1e-13 >seq7 Length=1425097 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35534 TGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGC 35593 || ||||| |||||| ||||||||||| |||| | || || |||| || |||||| Sbjct 30191 TGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGC 30132 Query 35594 TTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTT 35653 || ||||| || || | ||||||||||| | |||| || |||||||||| |||||| Sbjct 30131 TTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTC 30072 Query 35654 TGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTC 35713 ||||| | | | | |||||| ||| || || || | ||||| || || || || Sbjct 30071 GCCTTCACATTGTCGATAGTGTCGGACGACTCAACTTCAAGAGTGATAGTCTTGCCAGTG 30012 Query 35714 AAAGTTTTCACAAATATCTGCAT 35736 | || || || || |||||||| Sbjct 30011 AGGGTCTTGACGAAAATCTGCAT 29989 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 29952 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAA 29893 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| || |||||||||| ||||| ||||| || Sbjct 29892 GATGAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCA-CGT 29834 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| ||| || ||||| | ||||| || || || || | ||| || | Sbjct 29833 TGTCGATAGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 29774 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 29773 CGAAAATCTGCAT 29761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 29496 CTCCTTTTGGATGTTGTAGTCCGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 29437 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 29436 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 29378 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | ||||| || || ||||| | |||||||| || || || Sbjct 29377 TGTCGATGGTGTCCGAAGACTCAACCTCAAGAGTGATCGTCTTGCCGGT 29329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | | ||| || |||| || |||||||| || ||||| Sbjct 29724 CTCCTTCTGGATGTTATAGTCCGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAA 29665 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| ||||| ||| | || Sbjct 29664 GATGAGACGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGT 29606 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || || ||||| | ||||| || || || || | ||| || | Sbjct 29605 TGTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGA 29546 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 29545 CGAAAATCTGCAT 29533 >seq10 Length=927812 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || || || Sbjct 77092 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 77033 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 77032 GATGAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 76974 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| ||| |||||||| | ||||| || || ||||| Sbjct 76973 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 76925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793256269880