Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq8 120 4e-22 seq7 91.5 2e-13 >seq6 Length=1458149 Score = 197 bits (218), Expect = 2e-45 Identities = 679/1046 (65%), Gaps = 27/1046 (3%) Strand=Plus/Minus Query 111053 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 111112 || || ||||| || ||||| | ||| | || | || ||||| || || ||| || Sbjct 935607 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTTTTGGCC 935548 Query 111113 GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT 111172 || |||||| || | || | ||||| | || || || |||||||| | ||| Sbjct 935547 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTG 935488 Query 111173 GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTT 111229 ||||| || ||||| || | | ||| | |||| | | |||| | ||| || Sbjct 935487 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGC---TGTTTTCAAAGTCGACGAACGCG 935431 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 |||||||| || || || | ||||| || || ||| || | | |||||| | Sbjct 935430 GGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATG 935371 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 || || || || | |||||| ||| || || |||| | || |||||| ||| | Sbjct 935370 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 935311 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||| || ||||||||||| ||| |||| || ||||| ||||| | | || || Sbjct 935310 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATG 935251 Query 111410 GCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTGG--CCCGT-CCCTCCGCCTCGTA 111465 || ||| | | || | | || | |||| ||| ||| | ||||| |||||| Sbjct 935250 GCGAACCAGAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTGCCCTCACGCTCGTA 935195 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCG--CGTCGGAGAGACCTGGTGCCTTG 111523 ||| ||| |||| ||||||||||| | | | |||||| ||||| || || | Sbjct 935194 CTTCTGGTACAGGGTCTCAAACTCCTC--CGAGTGAACGTCGGCAAGACCAGGGCACTCG 935137 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 | || || | || | ||| | ||| | |||| || ||||||||||| ||||| || Sbjct 935136 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 935077 Query 111584 ATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT 111643 | ||| || | | || || || | ||| |||| || | || ||||| || Sbjct 935076 ACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGG 935017 Query 111644 AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC- 111702 | |||||||| || | | ||||| ||||| |||||||| |||| || | | || Sbjct 935016 AGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACCA 934957 Query 111703 ---CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCAT 111759 | | | ||| | | || | || || || || || |||| | | || ||||| Sbjct 934956 GGGCGCTTGTTGCC-ACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGCAT 934898 Query 111760 TGGAATAATACCATCTGATTGACCATTTGTCCCC-CGAA-TACGAGATTTATTGGCTCTC 111817 || | |||||| | || | ||| || || || ||| |||||| | |||| | Sbjct 934897 GGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCT--TGGCACGA 934840 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || ||||| | ||||| || ||||| ||| ||||| || || || | | Sbjct 934839 ATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTG 934780 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| |||| ||| ||||| ||||| | |||| |||||||| ||| Sbjct 934779 AGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACGAC 934720 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 ||||| || || |||||||| ||||||||||| || | |||||| |||| | Sbjct 934719 ATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGCGC 934660 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | |||||| || ||| ||||| | ||| || |||| || |||||||| ||||| Sbjct 934659 TCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGATG 934600 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 | || ||||| | ||||| ||| || Sbjct 934599 GAAACACGCATAATCATGTGCTGCGG 934574 >seq8 Length=1386445 Score = 120 bits (132), Expect = 4e-22 Identities = 197/277 (71%), Gaps = 14/277 (5%) Strand=Plus/Plus Query 122529 GTTCATACCGATGAGGTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAAC 122588 ||| |||||||| || ||||||||| ||||| | |||| | ||||| || ||||| Sbjct 724962 GTTGATACCGATAAGCGCACATGGGAGCGCGTCTGTCAGGAACTCCTTCTCTATTTCAAC 725021 Query 122589 CGCCTCTTTCACGATGGCGTGGATAGTTTCGGTAGTG----GGTCTATTACGCAAAGTC- 122643 ||| || ||||||||| || || ||| || | ||| | | | | | Sbjct 725022 CGCTTCGGTCACGATGGTGTAGACTTCCTCGTCAGAGCAGCGGTGCTTGAG---ATGCCC 725078 Query 122644 -TTGAAGAGCTCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATT 122702 | || ||| |||| |||| || ||| | |||||||||||| || ||||| ||||| Sbjct 725079 ATAGAGGAGG--CACG-CAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATT 725135 Query 122703 TGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATG 122761 ||||| || || |||||||||| |||||||| | ||| | || || ||| |||| Sbjct 725136 CGAGAATGTAAGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCA-AATG 725194 Query 122762 ACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 | || ||||||||||| ||||||||||||||||| || Sbjct 725195 ATCCCGAGAAGAAGATGCCCTCCACACACGCAAAGGC 725231 >seq7 Length=1425097 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| || || || || || || || ||||| || || Sbjct 37513 GGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAGGCC 37454 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 |||||||| || |||||||| | ||| | || | | || || || ||||| ||||| Sbjct 37453 GGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAAGAT 37394 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG 122824 |||||| || || ||||||| ||||| || || ||||| |||| Sbjct 37393 ACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGA-CGAG 37348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031521125600