Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 228 1e-54 seq7 176 6e-39 seq8 127 3e-24 >seq6 Length=1458149 Score = 228 bits (252), Expect = 1e-54 Identities = 681/1041 (65%), Gaps = 31/1041 (3%) Strand=Plus/Minus Query 118527 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCG 118586 || || ||||| ||||||||||| || | |||||||| | ||| || || || || Sbjct 935607 TCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGAGTTTTTGGCC 935548 Query 118587 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 118646 || ||||| || | || | ||| || | | || || ||||| || ||||| Sbjct 935547 TCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGTAACGACCTTG 935488 Query 118647 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGACATACTTA 118703 ||||| || |||||||| | | | ||| | ||| | | |||| | ||| || Sbjct 935487 GTGATCTCGTGAAGCTTCTTGAAGTCATAGGTGC---TGTTTTCAAAGTCGACGAACGCG 935431 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 |||||||| || || || || || || || | ||| || | || |||||| || Sbjct 935430 GGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAGTACTCGATG 935371 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| | ||| || ||| || ||||||| || || || || ||||| | Sbjct 935370 ATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTAGACTTGCGG 935311 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 || || |||||||| || ||| | || || ||||| || |||| || || || Sbjct 935310 TTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCAAGGATG 935251 Query 118884 GCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGC---CCCTCTTCCTCGTA 118939 || ||||| | || | || | ||| ||| | | ||||| |||||| Sbjct 935250 GCGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTGCCCTCACGCTCGTA 935195 Query 118940 CTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGG--CCTCTGAGAGCCCTGGTGCCTTA 118997 ||| ||| |||| |||||||| || | | | | || | || || || || Sbjct 935194 CTTCTGGTACAGGGTCTCAAACTCCTC--CGAGTGAACGTCGGCAAGACCAGGGCACTCG 935137 Query 118998 TCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGG 119057 | ||||| | ||| | ||| | ||| | |||| || ||||||||||||||||| ||| Sbjct 935136 GCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCAGGG 935077 Query 119058 ATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 119117 | |||||| || |||| || || || |||| | || || | || || || || Sbjct 935076 ACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGG 935017 Query 119118 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 119177 | || | ||||| | | ||||| ||||| || || ||||| | || | | || Sbjct 935016 AGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGCACC- 934958 Query 119178 TTACGACGA------CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGC 119231 | | || ||| |||||| || || | || || |||| | |||| ||| Sbjct 934957 --AGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAGC 934900 Query 119232 ATTGGAATGATACCATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTC 119289 || || | ||||| | ||| | || || || || ||| |||||| | | |||| | Sbjct 934899 ATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCT--TGGCAC 934842 Query 119290 TGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCG 119349 | | ||| ||||| | |||||| || || || ||| ||||| || ||||| | Sbjct 934841 GAATGTTGTGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCT 934782 Query 119350 TGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCG 119409 |||| || ||||||| || ||||||||||| |||| | |||| ||||||||| || Sbjct 934781 TGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACG 934722 Query 119410 ACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATAC 119469 |||| ||||| ||| ||||||||||||||||| || || | ||||| |||| | Sbjct 934721 ACATCTGAGGGTGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTAGC 934662 Query 119470 CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGA 119529 | |||||| || ||| ||||| | ||| | |||| || ||||| ||||||| Sbjct 934661 GCTCGGACATGAGGTTGTACGTCTCAATGACCTTGTCGATGTTGTCACCGTGGATACCGA 934602 Query 119530 TCGAGACCCGCATAAACATGT 119550 | || || ||||||| ||||| Sbjct 934601 TGGAAACACGCATAATCATGT 934581 >seq7 Length=1425097 Score = 176 bits (194), Expect = 6e-39 Identities = 374/547 (68%), Gaps = 11/547 (2%) Strand=Plus/Minus Query 129717 CCAG-CTTGCCATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTG 129775 |||| |||| ||||| || || ||| |||||||||||| | ||| || | || | Sbjct 37812 CCAGACTTGGCATAGGCCGACACGCGCGACTCGAAGAAGTTGGCCTTGCCTTGCAGAGAG 37753 Query 129776 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACT-CCAATCTG 129834 || |||||||||| || || || ||| | ||||| | || || | | |||| Sbjct 37752 ATCATCTCCATAAAGTCGAAGGGATTCGTCGAGTTGTAGATCT-TGTCGTTGCCAAGAGC 37694 Query 129835 TTTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACC 129894 ||| ||||| || | |||| |||||||||| | |||| ||| ||||||||| Sbjct 37693 GACGAGCAGACGGTCGGCGACGAACTCAATGTATTGGCACATGAGACCGGCGTTCATACC 37634 Query 129895 GATGAGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCC 129953 |||||| ||| ||| ||||| || | |||| ||| ||||| | || || || | Sbjct 37633 GATGAGCG-ACACGGGGAGCGCCTCGGTAAGGAACTCCTGTTCAATCTTGACGGCCTCGC 37575 Query 129954 GCACGATGGCGTGAATG--GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTC 130011 | | || | |||| || |||| || | | ||| | | |||| || Sbjct 37574 GGATAATCTTCTCAATGAGGTTGGGGTGC--GGGCGACGGCGGAGATGGGTGAAAAGCAG 37517 Query 130012 CACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 130071 |||||| || |||||||||||||||||| |||||||| || || ||||| || Sbjct 37516 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAAGTGAG 37457 Query 130072 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 130131 || |||||||| || |||||||| | |||||| |||| ||| ||||||||||| || Sbjct 37456 GCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATCGAGGCAAACGAGCCAGAGAAAAA 37397 Query 130132 GATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC 130191 ||| ||||| || |||||||||| ||| |||||||||||||| || | | || Sbjct 37396 GATACCCTCGACGGCGGCGAACGCAATGAGGCGCTCAGCAAAGGA-CGAGCGCTCGTCGG 37338 Query 130192 AAA-CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTT 130250 ||| ||| | ||||| | ||||| |||| ||| || |||| ||||| ||| || | Sbjct 37337 AAATCCAACGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGGATGGTCTCGATGGCCT 37278 Query 130251 CAAAGAG 130257 ||||| Sbjct 37277 TGAAGAG 37271 >seq8 Length=1386445 Score = 127 bits (140), Expect = 3e-24 Identities = 197/275 (72%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 129886 GTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCAC 129945 ||| |||||||| || ||||||||||||||| | |||| ||||||| || || || Sbjct 724962 GTTGATACCGATAAGCGCACATGGGAGCGCGTCTGTCAGGAACTCCTTCTCTATTTCAAC 725021 Query 129946 AGCTTCCCGCACGATGGCGTGAA--TGGTC-TCCGTGCCAGGTCTATTGCGCAAAGTC-- 130000 ||||| |||||||| || | | || || | || | ||| | | | | Sbjct 725022 CGCTTCGGTCACGATGGTGTAGACTTCCTCGTCAGAGCAGCGGTGCTTGAG--ATGCCCA 725079 Query 130001 TTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTC 130060 | || ||| |||| |||| || ||| | |||||| || || ||||| || |||||| Sbjct 725080 TAGAGGAGG--CACG-CAAAGTCGGTGTGAATACCCTCATCTCGAGAGATAAGCTCATTC 725136 Query 130061 GAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAG 130120 ||||| || || |||||||||| |||||||| | |||||| || ||| |||||| Sbjct 725137 GAGAATGTAAGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCAAATGAT 725196 Query 130121 CCAGAGAAGAAGATCCCCTCCACACACGCGAACGC 130155 || ||||||||||| |||||||||||||| || || Sbjct 725197 CCCGAGAAGAAGATGCCCTCCACACACGCAAAGGC 725231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434728443160