Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 170 2e-37 seq7 132 6e-26 seq8 114 2e-20 seq13 111 2e-19 >seq6 Length=1458149 Score = 170 bits (188), Expect = 2e-37 Identities = 676/1054 (64%), Gaps = 25/1054 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||||| || |||||||||| || || || |||| || ||| Sbjct 934574 CCGCAGCACATGATTATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAGGTC 934633 Query 104282 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 104341 | ||||| ||| || |||||| | | |||| |||||| | || ||||||||| Sbjct 934634 ATTGAGACGTACAACCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTC 934693 Query 104342 AATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 104401 || |||||||| || || || ||||| |||||||| |||| | ||||| ||| Sbjct 934694 AACGCTGGTACTCCCCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGAAGGACGAC 934753 Query 104402 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 104461 || ||| |||| ||||| | || || | | || || || ||||| ||| ||||| Sbjct 934754 TCGATCGACGGCATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGT 934813 Query 104462 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA-TTCG-GGGGACAA 104519 || ||||| | ||||| || | | | |||| | |||||| ||| || || | Sbjct 934814 GGCATTGGTCTCCACATTCACAACATTCGTGCCA--AGGGCTCGTACATCGCCGGAACCA 934871 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| | || | |||||| | || ||||| || | | |||| || || || || | Sbjct 934872 ACGGTTACTCCAACGGTATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACG 934931 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | | ||| | | | || | | || |||| |||||||| ||||| Sbjct 934932 TCGACCAGGGT-GGCAACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCAT 934990 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 ||||| | | || |||||||| | || ||||| || | ||||||| || Sbjct 934991 GCGGACGTTTTCGACTTCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGCGCG 935050 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || || |||| |||||||||| | || || |||||||||||| | || |||| Sbjct 935051 CGTGACCTGTTCTACGCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGAC 935110 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA--TGCCGTGGGTG 104813 || | ||| | ||| | || || | | || |||||||| |||| | | | | | Sbjct 935111 GGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCTGGTCTTGCCGACGTTCACTCG--G 935168 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAG---GAAG---AAGGTCGGGCGACTGCGA 104867 |||||||||| |||| ||| ||||||||| || | | ||||| ||| | Sbjct 935169 AGGAGTTTGAGACCCTGTACCAGAAGTACGAGCGTGAGGGCAAGGGTCGCAAGACCATCA 935228 Query 104868 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || |||| || | ||| || || || || | || |||||||||||| | Sbjct 935229 AGG-CCCAGAAGC-----TCTGGTTCGCCATCCTTGAGGCCCAGACCGAGACTGGTGGCC 935282 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | | ||| || ||||| ||||| |||| ||| ||| || || | |||| | Sbjct 935283 CCTTCATCCTCTACAAGGACGCTGCCAACCGCAAGTCTAACCAGCAGCACCTGGGCACTA 935342 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 ||||| ||||| ||||| || || ||| | || | | || ||| || | Sbjct 935343 TCAAGTCGTCCAACCTCTGCACTGAGATCATCGAGTACTCTTCTCCCGACGAGGTTGCCG 935402 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | || ||||| || || || || || ||| || || || || | | || | || Sbjct 935403 TCTGCAACCTTGCCTCCATTGCCCTTCCCGCGTTCGTCGACTTTGAAAACAGCACCTATG 935462 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || || ||||| | || || || ||||| ||||| || | || || Sbjct 935463 ACTTCAAGAAGCTTCACGAGATCACCAAGGTCGTTACCAAGAACCTTGACTGCGTCATCT 935522 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | ||||||||| || || || || || ||| | || || || | | Sbjct 935523 CGCGCAACTACTACCCCGTTCAGGAGGCCAAAAACTCGAACATGCGCCATCGCCCCGTCG 935582 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT 105261 |||||||||| |||||||| || || | ||||| Sbjct 935583 GTCTCGGTGTCCAGGGTCTTGCCGACGCCTTCAT 935616 >seq7 Length=1425097 Score = 132 bits (146), Expect = 6e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 |||||||||||||| ||| | || || || || ||||||||||| |||||||| || Sbjct 37352 TCCTTTGCTGAGCGCCTCATTGCGTTCGCCGCCGTCGAGGGTATCTTTTTCTCTGGCTCG 37411 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || | | || | |||||||||||||| || |||||||| || ||| ||||||||| Sbjct 37412 TTTGCCTCGATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACTTTCTCCAAC 37471 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| |||||| || ||||| Sbjct 37472 GAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 37512 >seq8 Length=1386445 Score = 114 bits (126), Expect = 2e-20 Identities = 117/150 (78%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 94808 GACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTATT 94866 |||| |||| ||||||||||| ||||| ||||||||||| || || || ||| || || Sbjct 725239 GACTGATCGCCTTTGCGTGTGTGGAGGGCATCTTCTTCTCGGGATCATT-TGCTGCCATC 725181 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||||||||||| |||||||||| || || ||||| || |||||||||||| Sbjct 725180 TTCTGGCTCAAGAAGCGCGGTCTCATGCGTGGCCTTACATTCTCGAATGAGCTTATCTCT 725121 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 || || ||||| | ||| || |||||| Sbjct 725120 CGAGATGAGGGTATTCACACCGACTTTGCG 725091 >seq13 Length=761807 Score = 111 bits (122), Expect = 2e-19 Identities = 327/498 (66%), Gaps = 22/498 (4%) Strand=Plus/Plus Query 168278 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || ||||| ||||| || | ||||| |||||||||| ||| | ||| || | |||| | Sbjct 184493 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACTGTAGGGAGGTAGTAC 184552 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGGA 168397 || ||||| || | |||||| ||| | | ||||||||| || ||||| || | Sbjct 184553 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATAGTTGAGGATCGGATCGTCGTCCTTG 184612 Query 168398 TCAAAGA---------TCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTT 168448 | |||| || | |||| | ||||||| | |||| || |||| | Sbjct 184613 TGGAAGAGAAGGCGAGTCATGCGGGGAATATTTGTGAAAAT-GTAACGAGCG--CTCGCT 184669 Query 168449 TGAGACGCATCCTTACCACCCATGAGA-CGCGTACCAAACTGACCACACGGCTCAAGAAG 168507 ||||||||||| ||| ||| || |||||||||||||| ||||| || || Sbjct 184670 ------GCATCCTTACCTCCC-TGATTGCGAGTACCAAACTGACCGTTGGGCTCGAGGAG 184722 Query 168508 ATTGATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGA 168567 |||||| ||||| |||| ||| | ||| | || || ||| || |||| Sbjct 184723 ATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACT 184782 Query 168568 GACTTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTT 168626 ||| |||||||| || || ||| ||| | ||| | ||| | || ||| || || | Sbjct 184783 CTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATA-GCCACTCAGCTGAGCAACCT 184841 Query 168627 TCATCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCT 168686 ||| ||| ||| ||||| | |||| | || | ||||||||||| ||||| Sbjct 184842 TCAGATCAGAGGTGATCTTCTTTTTGAAGGCGCCATAGAGGACCTTGCGTTGACCAGGCT 184901 Query 168687 TGAGACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGA 168746 |||| |||||||| | || |||||||| | ||| |||| |||| || || Sbjct 184902 TGAGGCCATCCGCAACCGATGGTATAGAACGAATGTTGTCGGCCATGGAGAAGAGGATGA 184961 Query 168747 GGTCCTTGTGTACAAAGT 168764 | ||||||| || |||| Sbjct 184962 GTTCCTTGTTCACGAAGT 184979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260355263640