Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 147 7e-30 seq7 132 1e-25 >seq2 Length=3077766 Score = 147 bits (162), Expect = 7e-30 Identities = 403/615 (66%), Gaps = 2/615 (0%) Strand=Plus/Plus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || || ||||| | | || |||||||| | || || || || | Sbjct 1500746 CCCGAGGAGATCTCGTCCATGGTCCTCATCAAGATGAAGGAGACCGCCGAGGCCTACCTT 1500805 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 |||| || || | | || || | || || || ||||| || || || | |||||| Sbjct 1500806 GGTGGCACCGTCAGCAAGGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCTCAGCGT 1500865 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || || || || | ||| || || | | || || | || || || || Sbjct 1500866 CAGGCCACCAAGGACGCCGGTACCATCGCTGGTCTTGACGTCCTCCGTATCATCAACGAG 1500925 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || || || || || || || || | | ||| || || || || Sbjct 1500926 CCCACCGCCGCCGCCATCGCTTACGGTCTCGACAAGAAGTCTGAGGGTGAGAAGAACGTT 1500985 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || ||||| || | |||||||||||||| || || || || || || |||| ||||| Sbjct 1500986 CTCATTTTCGACCTTGGTGGTGGTACTTTCGACGTCTCGCTCCTTACCATTGAGGAGGGT 1501045 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 || || || || || || || |||||||| || || |||||||| || || ||||| || Sbjct 1501046 ATCTTCGAGGTCAAGGCCACCGCTGGTGACACCCACCTTGGTGGTGAGGACTTTGACAAC 1501105 Query 349892 CGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAG-CTAAAATTGATATTGGAGA 349950 || || || || || || | || || ||||| |||| || | || ||| Sbjct 1501106 CGCCTTGTCAACCACTTCGTCCAGGAGTTCAAGCG-CAAGAACAAGAAGGACATTTCTTC 1501164 Query 349951 TAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATC 350010 || || | || | ||||| || | ||||| || || ||||||||||| || | || Sbjct 1501165 CAACGCTCGTGCTCTCCGTCGTCTCCGCACTGCTTGCGAGCGTGCTAAGCGCACCCTTTC 1501224 Query 350011 ATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTC 350070 ||| | | || ||||| || || ||||| || || || |||| || |||| | Sbjct 1501225 GTCTGCCGCTCAGACCTCGATCGAGATTGACTCGCTGTTCGACGGCATTGACTTCTACAC 1501284 Query 350071 ATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGA 350130 || || || ||||| || || || || | || ||| || || | | || ||||| Sbjct 1501285 CTCGATCACTCGTGCCCGTTTCGAGGAGCTCTGCCAGGACCTCTTCCGCTCCACCATGGA 1501344 Query 350131 TCCTGTGGAAAAAGT 350145 || || || || || Sbjct 1501345 GCCCGTCGAGAAGGT 1501359 >seq7 Length=1425097 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||||||||| || ||||| || || || ||||| || Sbjct 29763 CATACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTC 29704 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| ||||| ||||| || || Sbjct 29703 CGAGAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 29644 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || || || || || || || | || || | || Sbjct 29643 CGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 29584 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 29583 GACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| || ||||| || ||||| || || || || || || Sbjct 29991 CATACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTC 29932 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || |||||||| || || || |||||||| ||||| ||||| || || Sbjct 29931 CGAGAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 29872 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || |||||||| || || || || || || || | || || | || Sbjct 29871 GGGAATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTC 29812 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || ||||||||||| Sbjct 29811 GACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 118 bits (130), Expect = 3e-21 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||||| || ||||| | | || ||||| || | || ||||| || ||||| || | Sbjct 30223 TTTACTCGCCTCCACGAAGACGAAGGACAAGGTGCAACGTCGACTCCTTCTGAATGTTGT 30164 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || || || || || || || ||||| ||||| ||||| | Sbjct 30163 AGTCGGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGT 30104 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || || || ||||| || || | || || | Sbjct 30103 CGGGGGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCGGACG 30044 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||||| || | ||||| || || || || || || ||||||||||| Sbjct 30043 ACTCAACTTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29989 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | || ||||||||||| || ||||| ||||| || || || || Sbjct 29535 CATACCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTC 29476 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || || || || || |||||||| ||||| ||||| || || Sbjct 29475 CGAAAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGG 29416 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || || || || || || || | || || | || Sbjct 29415 CGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTC 29356 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716 ||| ||||| || | ||||| ||||| || Sbjct 29355 AACCTCAAGAGTGATCGTCTTGCCGGTAAG 29326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253215733983