Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 288 1e-72 seq13 156 5e-33 seq8 96.9 4e-15 >seq6 Length=1458149 Score = 288 bits (318), Expect = 1e-72 Identities = 408/566 (72%), Gaps = 6/566 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTACGA 53253 ||||| || || | ||||||||||||||| || | || | ||| |||||||||| | Sbjct 934589 ATGCGTGTTTCCATCGGTATCCACGGTGACAACATCGACAAG-GTCATTGAGACGTACAA 934647 Query 53254 CTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAA 53313 | | ||| | | ||||| || ||||| | || ||||| |||||||||||||| Sbjct 934648 CCTCATGTCCGAGCGCTACTTCACTCACGCTTCCCCGACCCTCTTCAACGCTGGTACTCC 934707 Query 53314 TCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCAT 53373 ||||||||||||||| |||||||| || || |||||||| ||||||||||||||||| Sbjct 934708 CCACCCTCAGATGTCGTCGTGCTTCCTCGTCGCTATGAAGGACGACTCGATCGACGGCAT 934767 Query 53374 CTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA 53433 |||||| || |||||| || ||||| ||||||||| | ||||| || ||| |||| Sbjct 934768 CTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGTGGCATTGGTCTCCA 934827 Query 53434 C-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | | | ||| | ||||| || ||| | ||| || || ||||| | || | | Sbjct 934828 CATTCAC-AACATTCGTGCCAAGGGCTCGTACATCGCCGGAACCAACGGTTACTCCAACG 934886 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | || || || |||||||| | || | || || ||||| |||||| |||||||||| Sbjct 934887 GTATTGTCCCCATGCTCCGTGCCTACGACGCGACCGCCCGTTACGTCGACCAGGGTGGCA 934946 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 |||||| || | || ||||||||||| ||||| ||||| || ||| || | || | Sbjct 934947 ACAAGCGCCCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCATGCGGACGTTTTCGACT 935006 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACA 53671 | || || || || ||| || || | || ||| | ||| ||||||||||| ||| Sbjct 935007 TCCTTGACCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGCGCGCGTGACCTGTTCTAC- 935065 Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731 ||||| ||| | || |||||||||||| | || ||| |||| || ||| ||| Sbjct 935066 GCTCTCTGGGTCCCTGACCTCTTCATGAAGCGTGTCGAGGCCGACGGTGACTGGACCCTC 935125 Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCT 53757 |||||||| ||||||||| || || Sbjct 935126 ATGTGCCCCGCCGAGTGCCCTGGTCT 935151 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 ||||| ||| ||| ||| || ||||||||| | ||||| | || ||| | | Sbjct 936105 TCAAGTCGATCTACAAGACTGTCTGGGAGATTTCGCAGAAAGCAGTTATCGACCTTGCCG 936164 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 |||| |||||||| | ||||||||||| ||||| || |||||| | || ||| |||| Sbjct 936165 CTGACCGTGGTGCCTTTATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCGAACCCTT 936224 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | | || | | || |||||||| ||||| |||||| || || ||||| || | Sbjct 936225 CGTTCTCGCAGCTTACTTCCATGCACTTCTACGGCTGGAAGCGTGGTCTTAAGACCGGCA 936284 Query 55908 TGTACTATCTGCGGACCCGCGCCAAGGCCAAGGC 55941 ||||||| || || |||||| | |||||| || Sbjct 936285 TGTACTACCTCCGTACCCGCCCGTCGGCCAACGC 936318 >seq13 Length=761807 Score = 156 bits (172), Expect = 5e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| || |||||||| || || | || ||||| || || Sbjct 184646 GTGAAAATGTAACGAGCGCTCGCTGCATCCTTACCTCCCTGATTGCGAGTACCAAACTGA 184705 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||| | ||| || | |||||| ||||||||||||||| || | || Sbjct 184706 CCGTTGGGCTCGAGGAGATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCCACG 184765 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || | ||||| ||| || || |||||||| || |||||||| | || ||||| Sbjct 184766 ATAGTGGCCTGGAGACTCTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATAGCCA 184825 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||||||||| ||||||| || || || | ||||| |||| | | |||| | ||| Sbjct 184826 CTCAGCTGAGCAACCTTCAGATCAGAGGTGATCTTCTTTTTGAAGGCGCCATAGAGGACC 184885 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||| |||| ||||| || |||||||| || || || ||||| || |||| Sbjct 184886 TTGCGTTGACCAGGCTTGAGGCCATCCGCAACCGATGGTATAGAACGAATGTTGTC 184941 Score = 138 bits (152), Expect = 1e-27 Identities = 276/405 (68%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || |||||||| |||| || || || ||||| ||| || Sbjct 184493 CCTGTACCAATACCATCGGCGCCGTTGACGAGAACCAAGGGTACTGTAGGGAGGTAGTAC 184552 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | ||||| ||| || || | | || || | | | || ||| || Sbjct 184553 TCGGGCTCGATCTGTTCACCATCTTCAACAAGATAGTTGAGGATCGGATCGTCGTCCTTG 184612 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | | |||||||| | | | ||||| ||||| || | ||| || ||| Sbjct 184613 TGGAAGAGAAGGCGAGTCATGCGGGGAATATTTGTGAAAATGTAACGAGCGCTCGCTGCA 184672 Query 152056 TCCTTGCCACC-TGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTT 152114 ||||| || || || || | || |||||||| || |||||||||||| |||| ||| Sbjct 184673 TCCTTACCTCCCTGATTGC-GAGTACCAAACTGACCGTTGGGCTCGAGGAGATTGATGTT 184731 Query 152115 GTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACC 152174 ||| |||||| || || || || | | ||| || ||| |||| |||||| ||| || Sbjct 184732 GTTACTGCCCACAAAGTTTTGCGCGAGACCCACGATAGTGGCCTGGAGACTCTGTTCGCC 184791 Query 152175 GTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT 152234 ||||||||| || |||||||| | | || || || ||| || ||||||| || | Sbjct 184792 GTGGTGATATGCTGTCTGCTCAGAAACATAGCCACTCAGCTGAGCAACCTTCAGATCAGA 184851 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCG---TAAATCACCTTGCGCTG 152276 || | ||||| |||| ||||| || | |||||||| || Sbjct 184852 GGTGATCTTCTTTTTGA---AGGCGCCATAGAGGACCTTGCGTTG 184893 >seq8 Length=1386445 Score = 96.9 bits (106), Expect = 4e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 |||||||| || | ||||||| |||| || || |||||||| | ||| ||||||||| Sbjct 725131 TCATTCGAGAATGTAAGGCCACGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGCAGCA 725190 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGA 74892 || || || |||||||||||| || |||||||||||||||| Sbjct 725191 AATGATCCCGAGAAGAAGATGCCCTCCACACACGCAAAGGCGA 725233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215582747800