Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 343 2e-89 seq7 188 8e-43 seq10 140 4e-28 seq13 116 4e-21 seq1 111 2e-19 >seq6 Length=1458149 Score = 343 bits (380), Expect = 2e-89 Identities = 713/1051 (68%), Gaps = 23/1051 (2%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| |||| || || ||||| || |||| ||| ||||| |||||| ||||||| Sbjct 935617 CATGAAGGCGTCGGCAAGACCCTGGACACCGAGACCGACGGGGCGATGGCGCATGTTCGA 935558 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 | ||||||| ||| ||||| |||| |||||||| || ||||| || Sbjct 935557 GTTTTTGGCCTCCTGAACGGGGTAGTAGTTGCGCGAGATGACGCAGTCAAGGTTCTTGGT 935498 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTC-------- 80886 ||| ||| || | || ||||| |||| ||||| || ||| | || Sbjct 935497 AACGACCTTGGTGATCTCGTGAAGCTTCTTGAAGTC--ATAGGTGCTGTTTTCAAAGTCG 935440 Query 80887 ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTA 80946 || || || |||||| | ||| || || ||||| ||||| ||||| || | | | Sbjct 935439 ACGAACGCGGGAAGGGCAATGGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGAGAAGAG 935380 Query 80947 AACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTT 81006 |||||| ||| || ||||| | || || ||||| || || ||||||| | |||||| Sbjct 935379 TACTCGATGATCTCAGTGCAGAGGTTGGACGACTTGATAGTGCCCAGGTGCTGCTGGTTA 935320 Query 81007 GACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGAC 81066 |||||| |||| ||||||||||||| ||| | ||| ||| |||||| ||| | | Sbjct 935319 GACTTGCGGTTGGCAGCGTCCTTGTAGAGGATGAAGGGGCCACCAGTCTCGGTCTGGGCC 935260 Query 81067 TTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCC 81126 | ||||||||| ||| | || | ||||||| |||||| ||||| || | Sbjct 935259 TCAAGGATGGCGAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCCTCACGC 935200 Query 81127 ACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCA 81185 | ||||| ||| || || || |||| | ||||| || | || | ||||| Sbjct 935199 TCGTACTTCTGGTACAGGGTC-TCAAACTCCTCCGAGTGAACGTCGGCAAGACCAGGGCA 935141 Query 81186 CTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTC 81245 |||| |||||||| ||| |||||| |||| ||| ||| ||||||||| ||| Sbjct 935140 CTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTC 935081 Query 81246 AGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAG 81305 ||||| |||||| ||| ||||||||| || ||| ||||||| | || ||||| Sbjct 935080 AGGGACCCAGAGAGCGTAGAACAGGTCACGCGCGCGAACCTCCTCCTTTCCGTGGTTCTT 935021 Query 81306 GCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGA 81365 ||| | || || ||||| | | |||||||||||| ||||| || || | ||| | | Sbjct 935020 GCGGAGGTCAAGGAAGTCGAAAACGTCCGCATGCCAGGGCTCAAGGTAGATGGCAAAGGC 934961 Query 81366 CCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAA 81422 || ||| | |||||||||| |||||||||||| ||||||| | |||| | Sbjct 934960 ACCAGGGCGCTTGTTGCCACCCTGGTCGACGTAACGGGCGGTCGCGTCGTAGGCACGGAG 934901 Query 81423 CATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG 81482 ||| |||| ||||| | || | |||||| || || |||| ||| |||||||| || Sbjct 934900 CATGGGGACAATACCGTTGGAGTAACCGTTGGTTCCGGCGATGTACGAGCCCTTGGCACG 934841 Query 81483 CACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGT 81541 | ||| ||| || ||||| |||||||| | ||| || ||||| || || | Sbjct 934840 AATGTTG-TGAATGTGGAGACCAATGCCACCAGCAGTCTTGGAGATCTGGGCGCAGGTCT 934782 Query 81542 TCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTG 81601 | | ||| || || || || ||||| || | ||||| | | | ||| || | Sbjct 934781 TGAGGGTGTCGTAGATGCCGTCGATCGAGTCGTCCTTCATAGCGACGAGGAAGCACGACG 934722 Query 81602 ACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATA 81659 ||||||||||| | ||| || || ||||| || || |||| |||||| |||| || Sbjct 934721 ACATCTGAGGG--TGGGGAGTACCAGCGTTGAAGAGGGTCGGGGAAGCGTGAGTGAAGTA 934664 Query 81660 ACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTG-GAATATCGTCACCGTGAATAC 81718 || | ||||| |||| || || || |||| | || || | ||||||||| |||| Sbjct 934663 GCGCTCGGACATGAGGTTGTACGTCTCAATGAC-CTTGTCGATGTTGTCACCGTGGATAC 934605 Query 81719 CGATAGCTACACGCATAAACATGTACTGGGG 81749 |||| | |||||||||| ||||| ||| || Sbjct 934604 CGATGGAAACACGCATAATCATGTGCTGCGG 934574 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | |||||| | |||||| | || || || || ||||||||||| ||||| Sbjct 936333 ACGGTGAACTGAATGGCGTTGGCCGACGGGCGGGTACGGAGGTAGTACATGCCGGTCTTA 936274 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || || |||||||||||| | |||||| ||| | |||| || | | |||||| | Sbjct 936273 AGACCACGCTTCCAGCCGTAGAAGTGCATGGAAGTAAGCTGCGAGAACGAAGGGTTCGAC 936214 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 | | |||||| || ||||| ||||| ||| || || ||||| || || || | || Sbjct 936213 AGGTGGATGTTGAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCAGCGGCAAGGTCG 936154 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 |||| || || || | ||| ||||| || || Sbjct 936153 ATAACTGCTTTCTGCGAAATCTCCCAGACAGT 936122 >seq7 Length=1425097 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || |||||||| ||||| Sbjct 29533 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 29592 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || ||||||||||||||||| || || || |||||| Sbjct 29593 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29652 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| |||||||| | ||||||||| | |||||||| Sbjct 29653 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTATAAC 29712 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| ||| | ||||| || ||||| Sbjct 29713 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGTCTCCGTGGTGG 29759 Score = 187 bits (206), Expect = 3e-42 Identities = 165/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 |||||||||||||| || ||||||||||||||||| || | ||| | || | ||| Sbjct 29326 CTTACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 29385 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||||||||| || ||||| || Sbjct 29386 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 29445 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | ||||||||| | ||||| || |||||||||| || || ||| Sbjct 29446 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCTT 29505 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| ||| | ||||| |||||||| Sbjct 29506 CATCTTGTCCTCCGTCTCCGCGGTGG 29531 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| ||||| |||||||| || || |||||||| ||||| || | ||| | Sbjct 29036 GTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 29095 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || ||||||||||||||||| || || || |||||||||||||| || Sbjct 29096 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 29155 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| |||||||| | ||||||||| | ||||| || |||| ||||| Sbjct 29156 TTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAG 29215 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| || | ||||| |||||||| Sbjct 29216 TCGACCCTTCATCTCGTTCTCCGTCTCCGCGGTGG 29250 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| ||||| Sbjct 29761 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCC 29820 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || ||||||||||||||||| ||||| || |||||| Sbjct 29821 GACACTATCGACAACGTGAAGGCGAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAG 29880 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || || | ||||||||| | ||||| || Sbjct 29881 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAAGACGGTCGTACCCTCTCGGACTACAAC 29940 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| ||||| || || | || || || ||||| Sbjct 29941 ATCCAGAAGGAGTCCACACTTCACCTCGTTCTCCGCCTGCGTGGTGG 29987 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || ||||||||||| |||||||| |||||||| Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || |||||||||||||| ||||| || |||||| Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||| | || || || | ||||| || Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | || || ||| | |||||||| || || Sbjct 30169 ATTCAGAAGGAGTCGACGTTGCACCTTGTCCTTCGTCTTCGTGGAGG 30215 >seq10 Length=927812 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||||||||| || || ||||| ||||| || | ||| | Sbjct 76913 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 76972 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || ||||||||||| || || Sbjct 76973 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 77032 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || ||||| | ||||| || |||| ||||| Sbjct 77033 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 77092 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || ||| | || || || ||||| Sbjct 77093 TCGACCCTCCACCTCGTCCTCCGCCTCCGTGGTGG 77127 >seq13 Length=761807 Score = 116 bits (128), Expect = 4e-21 Identities = 189/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 31978 GTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAAC 32037 || ||||| |||||||||||| || |||||||| | || | | | |||| ||||| Sbjct 184917 GTTGCGGATGGCCTCAAGCCTGGTCAACGCAAGGTCCTCTATGGCGCCTTCAAAAAGAAG 184858 Query 32038 CTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTAT 32097 | | ||| ||||||| || |||||| ||||| || | ||||| || || ||| Sbjct 184857 ATCACCTCTGATCTGAAGGTTGCTCAGCTGAGTGGCTATGTTTCTGAGCAGACAGCATAT 184798 Query 32098 CACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGT 32157 ||||||||||| | ||||||| ||| || || || || || |||||||| || Sbjct 184797 CACCACGGCGAACAGAGTCTCCAGGCCACTATCGTGGGTCTCGCGCAAAACTTTGTGGGC 184738 Query 32158 GCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGC 32217 || ||| | || | |||||||| || |||||||| || || || || Sbjct 184737 AGTAACAACATCAATCTCCTCGAGCCCAACGGTCAGTTTGGTACTCGCAATCAGGGAGGT 184678 Query 32218 AAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 |||||||| |||||| | |||||||| ||||| Sbjct 184677 AAGGATGCAGCGAGCGCTCGTTACATTTTCAC 184646 >seq1 Length=3521688 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| || ||||||||||| || || || ||||| ||||| || | || | Sbjct 2364971 GTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGACACGATCGAC 2364912 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||||| || || |||||||||||||| || || || |||||||||||||| || Sbjct 2364911 AACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGTCTCATC 2364852 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 || || || ||||| |||||||| | || ||||| | ||||| Sbjct 2364851 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTA 2364808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309965138320