Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7 127 2e-24 seq10 105 6e-18 >seq7 Length=1425097 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| |||| ||||||||||| || ||||| Sbjct 29989 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAAGTTGAGTCGTCC 30048 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || ||||| || Sbjct 30049 GACACTATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 30108 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| | || ||||||| |||||| Sbjct 30109 CAGCGTCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACTCTTTCCGACTACAAC 30168 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 ||||| ||||||||||| || || Sbjct 30169 ATTCAGAAGGAGTCGACGTTGCA 30191 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || |||||| | || || ||||| || || | || Sbjct 29533 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 29592 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || ||||| || ||||| || Sbjct 29593 GACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAG 29652 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||||| || | || ||| || ||| | || || || ||| Sbjct 29653 CAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTATAAC 29712 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| | || | ||| | || ||||| || Sbjct 29713 ATCCAGAAGGAGTCGACCCTTCATCTTGTCCTCCGTCTCCGTGGTGGTAT 29762 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||||||| | || |||||||| || || | || ||| | || || | ||||| Sbjct 29326 CTTACCGGCAAGACGATCACTCTTGAGGTTGAGTCTTCGGACACCATCGACAACGTCAAG 29385 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || ||||| || ||||| || |||||| | || | |||||| Sbjct 29386 GCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATCTTTGCCGGC 29445 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| || ||| |||| || |||||||| ||||||||||||||| | Sbjct 29446 AAGCAGCTCGAGGACGGTCGTACCCTTTCGGACTACAACATCCAAAAGGAGTCGACCCTT 29505 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | || | ||| | || ||||| || Sbjct 29506 CATCTTGTCCTCCGTCTCCGCGGTGGTAT 29534 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || |||||| | || || ||||| || || | || ||| | || || Sbjct 29036 GTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCGGACACCATCGAC 29095 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || ||||| ||||| || ||||| || ||||| || |||||| | || Sbjct 29096 AACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGTCTCATC 29155 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | |||||||| || | || ||| || ||| | || || |||||||| || |||||| Sbjct 29156 TTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTCTCGGACTACAACATCCAGAAGGAG 29215 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| | ||| | ||| | ||| | || ||||| || Sbjct 29216 TCGACCCTTCATCTCGTTCTCCGTCTCCGCGGTGGTAT 29253 >seq10 Length=927812 Score = 105 bits (116), Expect = 6e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || |||||| |||| || || || ||||| |||||||| | || || Sbjct 76913 GTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATCGAC 76972 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || ||||| || ||||| || ||||| || ||||| | || Sbjct 76973 AACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCCTCATC 77032 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | ||||||||| || | || ||| | ||| |||| || |||||||| || |||||| Sbjct 77033 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAG 77092 Query 27180 TCGACC 27185 |||||| Sbjct 77093 TCGACC 77098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918068374720