Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20montevideense_20[genbank_20GCA_5F001598995.1_202016- 03-01] 61 sequences; 24,872,216 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq7 172 1e-37 seq10 147 5e-30 seq1 138 2e-27 seq13 91.5 3e-13 >seq7 Length=1425097 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 29988 ACCACCACGCAGGCGGAGAACGAGGTGAAGTGTGGACTCCTTCTGGATGTTGTAGTCCGA 29929 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || || || || ||||||||||| | ||| || ||||| || Sbjct 29928 GAGGGTACGACCGTCTTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 29869 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| || || ||| | ||||||||||| || | ||||| Sbjct 29868 AATGCCCTCCTTGTCCTGAATCTTCGCCTTCACGTTGTCGATAGTGTCGGACGACTCGAC 29809 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 29808 CTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29761 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| || || || ||||| || || || ||||||||||| | | Sbjct 30215 CCTCCACGAAGACGAAGGACAAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGAA 30156 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || ||||| | ||| || ||||| ||| Sbjct 30155 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCGGGGGGA 30096 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || || | ||||||||||| || | || ||| Sbjct 30095 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTGTCGGACGACTCAACT 30036 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||| || || | ||||| ||||| |||||||| Sbjct 30035 TCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAAATCTGCAT 29989 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || ||||| | || || || |||||||| ||||| | Sbjct 29760 ACCACCACGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCCGA 29701 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||||||||| | ||| || ||||| ||| Sbjct 29700 GAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 29641 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| Sbjct 29640 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 29581 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || || | |||||| ||||| |||||||| Sbjct 29580 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 29533 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | || || ||||||||||||||||| | Sbjct 29532 ACCACCGCGGAGACGGAGGACAAGATGAAGGGTCGACTCCTTTTGGATGTTGTAGTCCGA 29473 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || || ||||| || || || ||||||||||| | ||| || ||||| ||| Sbjct 29472 AAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 29413 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| |||||||||| || || Sbjct 29412 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCAAC 29353 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || |||||||||||||| || || Sbjct 29352 CTCAAGAGTGATCGTCTTGCCGGT 29329 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | || || || |||||||||||||| | Sbjct 29251 ACCACCGCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 29192 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || ||||| || || || ||||||||||| | ||| || ||||| ||| Sbjct 29191 GAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGCGG 29132 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| | ||||| |||||||||| ||||| Sbjct 29131 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCGAC 29072 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || ||||| ||||| ||||| | ||||| || Sbjct 29071 CTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 29036 Score = 102 bits (112), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 230186 TGAAAAGGAGTTCATTTGCGACGCTATTCCT-TGCCGTCTTATCGGCATGAATGCTGATC 230244 |||| |||||||| || ||| || | || || || || ||||| ||||| || | || Sbjct 37591 TGAACAGGAGTTCCTTACCGAGGCGCTCCCCGTGTCG-CTCATCGGTATGAACGCCGGTC 37649 Query 230245 TCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGA 230304 ||||| | ||||| || || ||||| || || ||| | |||| || || || |||| | Sbjct 37650 TCATGTGCCAATACATTGAGTTCGTCGCCGACCGTCTGCTCGTCGCTCTTGGCAACGACA 37709 Query 230305 AAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAA 230364 | | || ||||| | ||| ||||||| ||||||||| | || || || || || || Sbjct 37710 AGATCTACAACTCGACGAATCCCTTCGACTTTATGGAGATGATCTCTCTGCAAGGCAAGG 37769 Query 230365 CTAACTTCTTCGA 230377 | ||||||||||| Sbjct 37770 CCAACTTCTTCGA 37782 >seq10 Length=927812 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | || || || |||||||||||||| | Sbjct 77128 ACCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 77069 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 77068 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGGGG 77009 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || | || || Sbjct 77008 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGACGACTCCAC 76949 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| ||||| ||||| | ||||| || Sbjct 76948 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 76913 >seq1 Length=3521688 Score = 138 bits (152), Expect = 2e-27 Identities = 130/166 (78%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | ||| |||||||| ||||| || || || ||||| ||||| | ||| || | Sbjct 2364806 TGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2364865 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||||| || || ||||||||||| |||||||| || || ||| | ||||| ||||||| Sbjct 2364866 GGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATCGTGTCCG 2364925 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 | | ||||| ||||| ||||| ||||| || || | |||||||| Sbjct 2364926 ACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAAC 2364971 >seq13 Length=761807 Score = 91.5 bits (100), Expect = 3e-13 Identities = 191/285 (67%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | || ||||| ||||| || || || | | ||||||| Sbjct 184643 TTTGTGAAAATGTAACGAGCGCTCGCTGCATCCTTACCTCCCTGATTGCGAGTACCAAAC 184702 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| | |||| || || |||||||| || || || | | || || | | | Sbjct 184703 TGACCGTTGGGCTCGAGGAGATTGATGTTGTTACTGCCCACAAAGTTTTGCGCGAGACCC 184762 Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956 |||||||| |||| || |||||||||||||| || | || || | | ||| Sbjct 184763 ACGATAGTGGCCTGGAGACTCTGTTCGCCGTGGTGATATGCTGTCTGCTCAGAAACATAG 184822 Query 273957 CCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAAC 274016 ||||| | |||||||||||||| ||| || | || ||||| ||| ||| | Sbjct 184823 CCACTCAGCTGAGCAACCTTCAGATCAGAGGTGATCTTCTTTTTGAAGGCGCCATAGAGG 184882 Query 274017 ACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATA 274061 ||||| || || ||||||| ||||| | |||||||| ||| Sbjct 184883 ACCTTGCGTTGACCAGGCTTGAGGCCATCCGCAACCGATGGTATA 184927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738381907894