Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5 120 6e-22 seq2 98.7 2e-15 >seq5 Length=2378914 Score = 120 bits (132), Expect = 6e-22 Identities = 300/445 (67%), Gaps = 8/445 (2%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 |||||||||||||||||| |||||| | || || ||||| | || || || Sbjct 2242272 TCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCG 2242331 Query 230230 TTCTGCG-CCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAA 230288 || |||| ||||||| ||||| ||| ||| | ||||| || ||| | || || Sbjct 2242332 TT-TGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAA 2242390 Query 230289 CGAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAA 230347 |||| ||||| || |||||||||||||| || | | || | | || ||| | Sbjct 2242391 CGAGCTCATCTCGCGTGACGAGGGTCTCCA-CACCGACTTTGCCTGCCTCCTGTTCACCC 2242449 Query 230348 AGCTCCAGAACAAGCTACCATTCG-AGACGGTCAAACAAATCATTACAGAAGCAGTTGAA 230406 | |||| | || ||| || | || |||| ||||| || || || | Sbjct 2242450 ACCTCCGTCGCC-GCCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCC 2242508 Query 230407 AACGAAAAGGAGTTCATTTGTGACGCTATTCCA-TGTCGCCTTATTGGCATGAACGCTGA 230465 | || |||||||| | ||||| | || |||||| | |||||||||||||| | Sbjct 2242509 ATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGC-TCATTGGCATGAACGCCAA 2242567 Query 230466 ACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGA 230525 || ||| | |||||||| || || || |||||||| | | || || || || |||| Sbjct 2242568 GCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGA 2242627 Query 230526 GAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAA 230585 || ||||| |||| |||||||| | ||||||||| | || ||||| || || || Sbjct 2242628 CAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAA 2242687 Query 230586 GACCAACTTCTTCGAAAAGCGTGTC 230610 | ||||||||||||| ||||||| Sbjct 2242688 GGCCAACTTCTTCGAGTCGCGTGTC 2242712 >seq2 Length=4282893 Score = 98.7 bits (108), Expect = 2e-15 Identities = 467/726 (64%), Gaps = 22/726 (3%) Strand=Plus/Plus Query 281475 CCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTCTCCAGATATCAAACGC 281534 || ||||| || | ||||||| |||| ||| | ||||| ||| |||| || Sbjct 1615428 CCCTTGAAACCACGGAACCACGGAGTCATGGGGACCATCTCCTCGCCACGCATCAGGCGG 1615487 Query 281535 TTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTT 281594 | |||||| |||||||| ||| || || |||| || |||| ||||||||| Sbjct 1615488 CGGAGGTTGTCCACGATGTCGACGGGGTTGTAGTTGGGGATCGAAGTACTCCAACCGGTA 1615547 Query 281595 CCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGT 281654 || ||||| | |||||| || | | | |||| | || | || |||| || Sbjct 1615548 CCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAATTCAGGC 1615607 Query 281655 TCAATTTTATCACCATCATCATACAAA-TACTTCAGAAGGTTATCATCTGTATCGACGAA 281713 || || | | ||||||||| |||| || || ||||| || || | | | || Sbjct 1615608 TCGATGCTCTGGCCATCATCA-ACAAGGTAGTTGAGAAGCGCATTGTCGGCAGAGTGAAA 1615666 Query 281714 AACC-TGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTT 281772 | | ||| | ||| | || | || ||| |||| || | || ||||| || | Sbjct 1615667 GATCGTGTGG-GTCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGCAGCATCCT 1615725 Query 281773 TACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGC 281832 |||||||||| | | || || ||||| || | || | | ||||| ||| |||| Sbjct 1615726 TACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTGTTGC 1615785 Query 281833 TCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACC--TCACCGTG 281890 | ||||| | | ||| || || ||| || ||| |||| || || |||||||| Sbjct 1615786 TACCGACAAACTTCTGCGCAAGACCGACAATGGTCA--TGAACAGAGACTGTTCACCGTG 1615843 Query 281891 GTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGT 281950 ||| || || ||| ||||| ||||||||| | | ||| || ||||| | || | Sbjct 1615844 GTGGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTCCTTCTT 1615903 Query 281951 CAAGTTGCGTTTGAAAG--CGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCA 282008 | ||| || || |||| ||||| | | || || || ||| |||||||| ||| || Sbjct 1615904 GAGGTTACGCTT-AAAGCACGCAA-AAAGAACCTTGCGCTGACCAGGCTTGAGACCGTCG 1615961 Query 282009 ACGACAGACGGAATGCTGCGTTCCAGGTCATACCGC----GAGAACAAAATAAGTTCCTT 282064 |||| || |||||| || | || | |||| ||||| | ||| || ||||| Sbjct 1615962 GCGACCGAGGGAATGGAACG---AATGTTGT-CCGCCATGGAGAAGAGAATGAGCTCCTT 1616017 Query 282065 GTCAATGAAGTCGGGAACGGGAACCTCGGGCTTCTTGTGGTCAAGTTGGTTTCCCGGCTC 282124 || | ||||| | | ||| | || | | | |||||| || | | || |||| Sbjct 1616018 GTTGACAAAGTCCTGGATGGGGATCTTGTCGGTGTCGTGGTCGAGGAAGGTGCCGGGCTT 1616077 Query 282125 GTA-TGCCGTCATCCACTCCTTGCGATCCTCGGCCCGAGTCTTGTTGAAAGAACGATCGA 282183 | | || || | |||||||||||| || |||||| ||||||| || | |||| Sbjct 1616078 GAACTGACG-AAGCCACTCCTTGCGGTCGTCGGCCTTCTTCTTGTTAAATGCCATGTCGA 1616136 Query 282184 TGAGCT 282189 |||||| Sbjct 1616137 TGAGCT 1616142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823498525310