Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5 109 6e-19 >seq5 Length=2378914 Score = 109 bits (120), Expect = 6e-19 Identities = 262/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 |||||||| | ||| || ||||| || || || | |||||||| || || ||| Sbjct 2242414 CCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTC 2242355 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| || || | || ||||| || || ||||| ||||||||||||| ||||| Sbjct 2242354 TTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAG 2242295 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTC 17163 ||||| | || ||||| ||| || || ||| | ||| ||||| | | |||| || Sbjct 2242294 GCGATGAGACGCTCGGCAAACGACGAGTTCTTG-TCCGAGATCCAGTGGAGGGCCCAGTC 2242236 Query 17164 GGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 ||| || | ||| ||||| || | || || || || || | | || | | Sbjct 2242235 GGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGTTGAACAGGT--AGTTGCGGCGG 2242178 Query 17224 TAG--GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | ||| || || || |||||||| || ||| | |||||||| ||||||||| Sbjct 2242177 GCGTTGTCACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCC 2242118 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 || ||||| || ||||||||| ||| || || || || || || | |||| Sbjct 2242117 ATCATGATCTGGAAGCCGTAAAAGGTCTTGGCCTCGGCAATCTGGACCTCGCCACAGAAA 2242058 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 || || | || || ||||| || |||||||| Sbjct 2242057 CGCTCGACCAGGTTCTCGTTGACAATGCCGTC 2242026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545360635160