Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq2 111 2e-19 >seq5 Length=2378914 Score = 111 bits (122), Expect = 2e-19 Identities = 177/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 2242435 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 2242376 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| || || ||||| || ||||| || ||||||||||| || || || ||||| Sbjct 2242375 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 2242316 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT--- 24311 || || || || || |||||||| || || | ||| || || || || ||| Sbjct 2242315 ATACCCTCGACGGCGGCAAAGGCGATGAGAC--GCTCGGCAAACGACGAGTTCTTGTCCG 2242258 Query 24312 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 24369 ||||| | | ||||| ||||||||||| || | || || || | || || || | Sbjct 2242257 AGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGT 2242198 Query 24370 TAAAGAGATAGTT 24382 | || || ||||| Sbjct 2242197 TGAACAGGTAGTT 2242185 >seq2 Length=4282893 Score = 111 bits (122), Expect = 2e-19 Identities = 433/678 (64%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 53996 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 54055 || ||||| | | ||| || ||||| ||| || || ||||| ||||| || || ||| Sbjct 3325781 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 3325722 Query 54056 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 54115 || || || || || || | || | | ||||| || || ||||| || Sbjct 3325721 CAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 3325662 Query 54116 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGC 54175 || ||||| | | | || | ||||| || || | ||| |||| | | || || Sbjct 3325661 TCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 3325602 Query 54176 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 54235 || ||||| || ||||| || | ||| | ||||||| || || | | | ||| || Sbjct 3325601 CGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGG 3325542 Query 54236 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTA 54295 | ||||| ||||| ||| ||||| |||| || || || |||| ||||| || Sbjct 3325541 ACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTG 3325482 Query 54296 CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 54355 || ||||| || || || || | || ||||| ||||| || | || Sbjct 3325481 TGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTG 3325422 Query 54356 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 54415 || ||||| || || || || ||| ||||| | || || || ||||| ||| Sbjct 3325421 TCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGG 3325362 Query 54416 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 54475 | || || || || || || | ||| || || ||||||||||| | || || Sbjct 3325361 GGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGAC 3325302 Query 54476 AGTAGATTGTACGTCTCGATAGCTGAGTCTAT-ATCCCATTGATGAATTCCTACTGCGAC 54534 | || ||||| ||||||| | ||| || | || | || || || | ||||| Sbjct 3325301 ATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCG-TGGATACCGATGGCGAC 3325243 Query 54535 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGA 54594 |||||| | ||||||||| || | || ||| |||| || || || | ||| || Sbjct 3325242 ACGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGA 3325183 Query 54595 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 54654 || | || || || ||||| |||||||| |||||||| || ||||| ||||| | Sbjct 3325182 GCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTAGATAATGGC 3325123 Query 54655 TGAGTTGAGTTTATCCTT 54672 |||| ||| |||||| Sbjct 3325122 CGAGTCGAGAACATCCTT 3325105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721325403760