Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8 147 3e-30 >seq8 Length=1346441 Score = 147 bits (162), Expect = 3e-30 Identities = 237/341 (70%), Gaps = 0/341 (0%) Strand=Plus/Minus Query 145926 CGGGTTCCAGGCGGTGAGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTAT 145985 ||||||||| ||| |||| || | | |||| ||||| |||| |||| | || Sbjct 730462 CGGGTTCCATGCGCTGAGAACAATACGCCTGTCGGTGGGGTCATTCTTAATCTTGTCAAT 730403 Query 145986 CAGGTCCCTGAGCTGGTCCACGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGC 146045 | ||| |||||||||||||||||| || || || || | || | || | Sbjct 730402 GACCTCCATGAGCTGGTCCACGCCCTTGCCGGAATAGTCGTCCTCGCAGGTACCATAGTC 730343 Query 146046 GGCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTG 146105 ||| || ||||||||||||||||| || || ||||| |||||||| || | || ||| Sbjct 730342 GGCGCCAAAGTGCCTCCACTGGAAGCCATACACGGGTCCCAGGTCGCCTTCCCTCCGGTG 730283 Query 146106 CCCCAGCCCGGCCCGGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCC 146165 || || ||| | ||| ||||| | |||| | |||||| || ||||||| |||| ||| Sbjct 730282 ACCAAGACCGACGCGGTCGAGGTACTCCCTGCTGCCGTTGCCGGCCCAGATGTTGATGCC 730223 Query 146166 CCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAG 146225 | | ||| |||| | | | ||| ||| | ||| || |||||||| ||||| || | Sbjct 730222 CTTGTCGGCGAGCACCTGGCCGTCGGTGCAGCCCGAGACAAACCAGAGGAGCTCCTCAAT 730163 Query 146226 GACCCCCCTCCAGAAGACCCTCTTGGTGGTCAGCAGGGGGA 146266 || || | ||| || | ||||||||| |||| ||||| Sbjct 730162 CACGCCGCGGGTGAACACGCGCTTGGTGGTGAGCAAGGGGA 730122 Score = 111 bits (122), Expect = 2e-19 Identities = 170/246 (69%), Gaps = 21/246 (9%) Strand=Plus/Minus Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746 |||||||| |||| ||| ||||||||||| |||| | ||||||| || | | Sbjct 730830 GGCTCCACATGGTCCCTGTAAACGTGCGCGTCGCCCATCTGGAGGATGAACTCGTGCGCC 730771 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 ||| ||| || | ||||||| ||||| ||| || || | ||| ||||| |||||||| Sbjct 730770 TCGGTGCCGGTTACCTGGGCGATCATGTGGGTGAGGAGCGCGTAACTGGCAATGTTGAAA 730711 Query 145807 GGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCT-------- 145858 || || || || |||| ||| | || |||||||||| |||||||||||| Sbjct 730710 GGGACACCGAGACCCAAGTCGCATGACCGCTGGTACATGAGGCAGGAGAGCTTGGGCTTG 730651 Query 145859 -CCCCGCCCGCC------------ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGG 145905 || || || | ||| |||||||||| | | ||||||||| |||||| Sbjct 730650 GCCTCGGGCGTCTCGGGGAGGGTGACGAAGAACTGGCAGAACATGTGGCAGGGGGGCAGG 730591 Query 145906 GCCATG 145911 |||||| Sbjct 730590 GCCATG 730585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590076527089480