Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5 307 1e-78 seq2 167 2e-36 seq3 123 3e-23 >seq5 Length=2378914 Score = 307 bits (340), Expect = 1e-78 Identities = 466/654 (71%), Gaps = 8/654 (1%) Strand=Plus/Plus Query 116780 GACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAG 116839 |||||||| ||||||||||| ||||||||||||||| | ||||| ||| | |||||| Sbjct 2242026 GACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCTGTGGCGAGGTCCAGATTGCCGAG 2242085 Query 116840 GCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCG 116899 || | ||| |||||||| |||||| ||||||||| | ||||| || | || ||| Sbjct 2242086 GCCAAGACCTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCG 2242145 Query 116900 ACCCTCATCGACACGTACGTGCGCT-CTTCGGAGGA-GAAGCTCCGTTTGTTGAACGCCA 116957 |||||||||||| ||| | || | || | | | || | | ||| ||||| | Sbjct 2242146 CTCCTCATCGACACCTACATCCGTGACAACGCCCGCCGCAACTACCT--GTTCAACGCGA 2242203 Query 116958 TCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCA 117017 | || | || || ||| |||| |||||||||| ||||| || | ||||||| | | || Sbjct 2242204 TTGACAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCGGACA 2242263 Query 117018 GAGAGGCCGCC-TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTT 117076 ||| || | || | |||||| || | ||||| || ||||||||||| ||||||| Sbjct 2242264 -AGAACTCGTCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTC 2242322 Query 117077 TCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACT 117136 |||||| || || |||| || ||||||||||| ||||| ||||||||||| || || Sbjct 2242323 TCGGGCTCGTTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACC 2242382 Query 117137 TTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTG 117196 ||| ||||||||||||||| | ||||||||||| || |||||||||||| | ||| Sbjct 2242383 TTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTG 2242442 Query 117197 TTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCG 117256 |||| || | | || || | ||| | ||| |||| || ||| || Sbjct 2242443 TTCACCCACCTCCGTCGCCGCCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCC 2242502 Query 117257 GTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAAT 117316 |||||||| |||||| ||||||||||| || || || ||| || | || | || Sbjct 2242503 GTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATGAA- 2242561 Query 117317 TGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGT 117375 || || | |||| || ||||| ||||| ||||||||| | ||||| ||| || | Sbjct 2242562 CGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGG 2242621 Query 117376 CGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 | || ||||| ||| || || ||||||| | ||||||||| | | ||||| Sbjct 2242622 CAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTC 2242675 Score = 138 bits (152), Expect = 1e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||| || | || ||||| | | Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 2288724 GACACCATCGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCA 2288782 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 2288783 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAA 2288842 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || ||||| || || Sbjct 2288843 CATCCAGAAGGAGTCGACCCTGCACCTTGT 2288872 Score = 131 bits (144), Expect = 2e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| ||||||||| |||| ||||| | |||||| | | | |||| |||| Sbjct 2288457 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACG-TCAA 2288515 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| ||||| || ||| | |||||||| || ||||| | ||| || Sbjct 2288516 GAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCGG 2288575 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| |||||||| |||||||||||||||||||||| | || || Sbjct 2288576 CAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTCT 2288635 Query 40890 GCATCTAGT 40898 || || || Sbjct 2288636 CCACCTTGT 2288644 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || || |||| ||||| | || Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| ||||| ||||| | ||||| Sbjct 2288952 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 2289010 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| ||||| || |||| || || ||| |||||||| Sbjct 2289011 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCAGACTACAA 2289070 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| ||||||||| | || || || || || | || || | |||||| Sbjct 2289071 CATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGGC 2289119 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| ||||| ||||||||| |||| ||||| || | |||| | | |||| |||| Sbjct 2288123 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACTATCGACAACG-TCAA 2288181 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||||||| | |||||||| || ||||||| ||| || Sbjct 2288182 GTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 2288241 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||| ||||| || |||| || ||||| |||||||| Sbjct 2288242 CAAGCAGCTCGAGGACGGCCGTACCCTTTCCGACTACA 2288279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/143 (75%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| |||||| |||||||||||||||||| ||||||| | |||| Sbjct 2241826 ATCTGGCAGATGTACAAGAAGGCCCAGGCGTCGTTCTGGACCGCCGAGGAGATCAACCTC 2241885 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAAG 116752 | ||| | ||||||||| | | ||||||||||||||| | || ||| || Sbjct 2241886 GCTGCCGACCTGCACGACTGGGACAACAAGCTCAACGACAACGAGCGCTACTTTATCGAG 2241945 Query 116753 CACGTGCTGGCCTTTTTCGCCGC 116775 ||||| || ||||| || || || Sbjct 2241946 CACGTCCTCGCCTTCTTTGCGGC 2241968 >seq2 Length=4282893 Score = 167 bits (184), Expect = 2e-36 Identities = 165/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || |||||||||||||| ||||||||| |||| ||||| || | Sbjct 1079055 AATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 1078996 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| ||||| || || | ||||| |||||||||||| | |||| Sbjct 1078995 GGACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACC 1078937 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 1078936 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 1078877 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| | || || || || || Sbjct 1078876 ACATCCAGAAGGAGTCGACCCTCCACCTCGT 1078846 >seq3 Length=3276928 Score = 123 bits (136), Expect = 3e-23 Identities = 192/272 (71%), Gaps = 8/272 (3%) Strand=Plus/Plus Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 ||||| || ||||| | || ||||| ||||||||| ||||||| |||||| | Sbjct 1613773 CCTTCCGCACACGCCTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGT 1613832 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACG 117146 | || ||||| || ||||||||||||||||| ||||||| ||| |||| ||| |||| Sbjct 1613833 TTGCGGCCATTTTCTGGCTCAAGAAACGCGGTCTCATGCGCGGATTGACATTCTCAAACG 1613892 Query 117147 AGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATT 117206 |||||||||| | || |||||| || ||||||||| || ||||| | ||| || Sbjct 1613893 AGCTCATCTCGCGCGATGAGGGTACCCACACCGACTTTGCGTGCTTGCTATACAACCACC 1613952 Query 117207 TGGTGCAGCG----ACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCC 117262 | ||| || ||||| | | | ||| | || ||| ||| || || ||| Sbjct 1613953 TCACGCACCGCTGCTCCGAG---GAGGAGGTTCACACA-ATTATCAGCGAGGCCGTGGCC 1614008 Query 117263 ATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294 || ||| || ||||||||||| || ||||| Sbjct 1614009 ATTGAGAAGGAGTTCCTCACCGATGCTCTGCC 1614040 Score = 123 bits (136), Expect = 3e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 || ||||| || || |||||| |||| || || | | |||| | | | |||| |||| Sbjct 2414300 CTTACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACG-TCAA 2414358 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 | || || | ||||| |||||||||||| | |||||||| || ||||||| ||| || Sbjct 2414359 GTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGG 2414418 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 ||| ||||| || |||| |||||||| ||||||||||||||||||||| | || || Sbjct 2414419 CAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 2414478 Query 40890 GCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || | ||| || | || || Sbjct 2414479 CCACCTCGTCCTCCGCCTGCGTGGTGG 2414505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218961711120