Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq5 116 3e-21 seq3 96.9 3e-15 >seq2 Length=4282893 Score = 125 bits (138), Expect = 6e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 1078851 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 1078910 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| |||||||||||||||| || || || |||||||||||||| || || Sbjct 1078911 CTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 1078970 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| | ||||||||||| ||| | || ||||| || Sbjct 1078971 CGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 1079030 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 1079031 GAGCGTCTTGACGAAGATCTGCAT 1079054 >seq5 Length=2378914 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || ||||||||||| || | || || |||||| Sbjct 2289100 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCG 2289041 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| || |||||||| |||||||| || ||||||||||| Sbjct 2289040 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 2288981 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||||||||||| || | ||| ||| Sbjct 2288980 ATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTG 2288921 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| || || || || |||||||| Sbjct 2288920 CCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| ||||||||||| || || Sbjct 2288860 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCG 2288801 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || |||||||| || || || |||||||||||||| ||| || || Sbjct 2288800 GCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 2288741 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| | ||||||||| | || | || |||||||| || || Sbjct 2288740 ACGTTGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTGAGGGTC 2288681 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 2288680 TTGACGAAGATCTGCAT 2288664 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| || || ||| |||||||||||||||| ||||| || |||||||||||| Sbjct 2288256 TCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTG 2288197 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| ||||||| | ||||||||||| ||| | Sbjct 2288196 TCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCGAGGGTGATG 2288137 Query 118704 GTTTTGCCGGTCAGA 118718 || |||||||| ||| Sbjct 2288136 GTCTTGCCGGTGAGA 2288122 Score = 102 bits (112), Expect = 7e-17 Identities = 283/432 (66%), Gaps = 3/432 (1%) Strand=Plus/Plus Query 44849 TTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTTCGGGGAGTTTT 44908 || ||||| || | |||| || ||| ||||| || | ||||| ||||| ||| Sbjct 2242275 TTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTTT 2242334 Query 44909 GCGGCGATATTTTACATGAAAACCAAGGGAGTGATGCCCGGACTGACGTTTAGCAACGAA 44968 ||| | || || | | || | || | |||||||| || || || |||||| Sbjct 2242335 GCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAG 2242394 Query 44969 TTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCTCTACTATAATACGAGA 45028 | || ||| | ||||| ||||| |||||| |||||||||||||| || | | | Sbjct 2242395 CTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTC--CTGTTCACCCACC 2242452 Query 45029 GTCGATCAAAAGTTGGACGCGCCCACCGTCAACGACATGTTCTCCGAAGCCGTGGCCATC 45088 || || || || |||| ||||| || || ||| ||||| ||||| Sbjct 2242453 TCCG-TCGCCGCCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCCATT 2242511 Query 45089 GAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGTTGGTGGGAATGAACGCGAATATG 45148 ||| ||| || | | || || || |||| ||| | | || |||||||| || | Sbjct 2242512 GAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATGAACGCCAAGCTC 2242571 Query 45149 ATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGTCCAGTTAAAGTATCCCAAG 45208 ||| | |||||||||||||||||||||| ||||| |||||| | | |||| Sbjct 2242572 ATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTCGGCAACGACAAG 2242631 Query 45209 ATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATATTTCGTTGGAGGGCAAAACT 45268 ||||| | | | ||||| ||||| |||||| | | || ||| || ||||||| | Sbjct 2242632 CTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCC 2242691 Query 45269 AAtttttttGAG 45280 || || || ||| Sbjct 2242692 AACTTCTTCGAG 2242703 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 2288639 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTG 2288580 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | |||||||||||||| ||||| || || ||||||||||| || || Sbjct 2288579 CTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTT 2288520 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | |||||| | ||||||||||| ||| | || |||||||| Sbjct 2288519 GCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 2288460 Query 118715 CAG 118717 || Sbjct 2288459 GAG 2288457 >seq3 Length=3276928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||||||||||| Sbjct 2414482 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTG 2414423 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| ||||||| |||||||| || || || |||||||||||||| || || Sbjct 2414422 CTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTT 2414363 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| |||||||| ||| ||||||| ||| | ||| || || || Sbjct 2414362 GGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGT 2414303 Query 118715 CAG 118717 || Sbjct 2414302 AAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830204369604