Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-23 seq2 114 8e-21 seq3 84.2 1e-11 >seq5 Length=2378914 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | ||| || ||||| |||||||||||||| Sbjct 2288662 CCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2288603 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||||||||| |||||||||||| ||| Sbjct 2288602 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 2288543 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 2288542 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288483 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAG 34368 || | |||||||| ||||||||||| Sbjct 2288482 TCGAGGGTGATGGTCTTGCCGGTGAG 2288457 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||||||||| || ||| |||| || | ||||||||| || || Sbjct 2288854 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 2288795 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 2288794 ATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTG 2288735 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| ||||| |||| ||| ||||| ||||||||||| || || || Sbjct 2288734 TCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACG 2288675 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 2288674 AAGATCTGCAT 2288664 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | || |||||||| | || || ||||| ||||||||||| || Sbjct 2289118 CCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAG 2289059 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| |||| |||| || | ||||||||| ||||| || || |||||||||||| || Sbjct 2289058 AGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGG 2288999 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||| ||||| Sbjct 2288998 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288939 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || |||||||| | || || || ||||||||||| Sbjct 2288938 TCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 34212 TGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCT 34271 |||||||||| || |||| |||| || | ||||||||| ||||| ||||| ||||||| Sbjct 2288279 TGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2288220 Query 34272 GGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGG 34331 ||||| ||| | || ||||||||| ||||| ||| | | | | || | || | Sbjct 2288219 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCCG 2288160 Query 34332 TCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGA 34369 || ||||| || | |||||||| |||||||||||| Sbjct 2288159 AGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGA 2288122 >seq2 Length=4282893 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| |||| || | ||||||||| ||||| Sbjct 1078864 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 1078923 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 1078924 ATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 1078983 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || ||||| || | |||||||| ||||| ||||| || || || Sbjct 1078984 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACG 1079043 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 1079044 AAGATCTGCAT 1079054 >seq3 Length=3276928 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| | || || ||||| ||||||||||| || Sbjct 2414505 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2414446 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| ||||| ||||||||||| ||| Sbjct 2414445 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2414386 Query 34283 ACGCTCTCCTTGTC 34296 | || ||||||||| Sbjct 2414385 ATGCCCTCCTTGTC 2414372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071854314720