Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 251 2e-61 >seq2 Length=4282893 Score = 251 bits (278), Expect = 2e-61 Identities = 621/928 (67%), Gaps = 32/928 (3%) Strand=Plus/Plus Query 248817 GTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAA 248876 |||| | | ||||| ||||| || || ||| ||||| |||||| || || ||||| Sbjct 3325149 GTACAACTACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCCTCCGCATCGACGGCAA 3325208 Query 248877 GATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGA 248936 | ||| || || ||||||||| | ||||| || || |||| || ||| || | Sbjct 3325209 GGTCGCCGAGCGTCCCCAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAA 3325268 Query 248937 CATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCAC 248996 ||| || | || |||||||| |||| | ||| || || | | || || ||| | Sbjct 3325269 CATTGACAAGGTCCTCGAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACGCCTC 3325328 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 || || |||||||||||||||||| || ||| || |||||||| ||| | || Sbjct 3325329 GCCCACCCTCTTCAACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTCGC 3325388 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAA-ACAGACGGCGAAGATTT 249115 |||| | |||||||| | ||||| || || ||||| || || || | || |||| | Sbjct 3325389 CATGAAGGACGACTCCATTGACGGTATCTACGACACCCTCAAGACCTGC-GCCCAGATCT 3325447 Query 249116 CTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACA 249175 | || || ||||| ||||||||| | || |||||| || || ||||| ||||||| Sbjct 3325448 CCAAGACTGCTGGCGGTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTACA 3325507 Query 249176 TCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCA 249235 | ||||| || || | | |||||||| ||| | || || || || ||| Sbjct 3325508 TTGCCGGTACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCA 3325567 Query 249236 CCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTATT 249289 |||| | | | || |||||| || ||||| || | || ||||| || Sbjct 3325568 CCGCTCGCTACGTCGACCAGGGTGGTAACAAGCGCC---CCGGTGCCTTTGCCATCTACC 3325624 Query 249290 TGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACG 249349 | || |||||||| || | || || ||||| ||| || |||||| ||||||| | Sbjct 3325625 TCGAGCCCTGGCACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGG 3325684 Query 249350 AGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCC 249409 || | | || |||||||| ||||||| ||| ||| || ||||| | |||||| | Sbjct 3325685 AGGAGGTTCGTGCCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGC 3325744 Query 249410 GCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCATC 249468 | ||| |||||||||| || ||||| || | | || |||| ||||||| |||| | Sbjct 3325745 GTGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGG-CCTCGCC 3325803 Query 249469 GA--TCTACACGGCGCCGACTTCGACCAAGCCTATA--AGAAATACGAATCCAACGGCAT 249524 || || || ||| | || || || | ||| || ||| ||||| |||| Sbjct 3325804 GACGTCCACTCGGAG--GAGTTTGA--GACCCTCTACGAGAGCTACGAGCGTGCTGGCAA 3325859 Query 249525 CG---GCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAGAT 249578 | ||||||| |||||||| | || || || || | | | ||| |||||| Sbjct 3325860 GGGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCCA---TCCTCGAGGCCCAGAC 3325916 Query 249579 AGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAAC 249637 ||||| || || || | | || | | ||| ||||| |||| ||||| ||||| | Sbjct 3325917 CGAGACTGGTGGCCCCT-TCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGC 3325975 Query 249638 GGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCA 249697 ||| || ||||||||| ||||| || ||||| | ||| | || | |||||||| Sbjct 3325976 AGCACCTCGGTACCATCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCGC 3326035 Query 249698 AGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| |||||||||||||||| || Sbjct 3326036 CCGACGAGGTTGCCGTCTGCAACCTTGC 3326063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073765890967616