Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq5 111 1e-19 seq2 95.1 1e-14 seq3 84.2 2e-11 >seq5 Length=2378914 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||||||||||||||| || || |||| || Sbjct 2289100 ACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCG 2289041 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| ||||||||||| | ||||||||||||| Sbjct 2289040 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGG 2288981 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||| ||||| | |||||||||||| Sbjct 2288980 ATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTG 2288921 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 2288920 CCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| || ||||||||| |||||||||||| || ||| |||| || || || Sbjct 2288867 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTG 2288808 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| || || | |||||||||||| ||| || Sbjct 2288807 CTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTT 2288748 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| ||| ||||||| ||||| |||||||| || Sbjct 2288747 GCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGT 2288688 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 2288687 GAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| |||| || || || || |||||||| Sbjct 2288627 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2288568 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || | ||||| |||||||| || | ||||||||||||| Sbjct 2288567 AATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 2288528 >seq2 Length=4282893 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || || |||||||| Sbjct 1078863 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1078922 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 1078923 GATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTT 1078982 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | ||||| ||| ||||| | ||| || ||||||||||| || ||||| || Sbjct 1078983 GTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGAC 1079042 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 1079043 GAAGATCTGCAT 1079054 >seq3 Length=3276928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || || |||||||| Sbjct 2414470 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2414411 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | ||||| ||||| || || | |||||||||||| || || ||| || Sbjct 2414410 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 2414351 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAG 45315 | | | ||||| | ||||||||| | ||| |||||||| ||||| || Sbjct 2414350 GTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTAAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075021845777