Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 315 6e-81 seq5 206 2e-48 seq3 100 3e-16 >seq2 Length=4282893 Score = 315 bits (348), Expect = 6e-81 Identities = 653/963 (68%), Gaps = 12/963 (1%) Strand=Plus/Minus Query 23017 GACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAAT 23076 || ||| ||||||||||| ||||| ||||| |||||||| |||| |||||| | ||| Sbjct 3326076 GAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAAT 3326017 Query 23077 TTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCT-CTGGTTGCTTTTTCGA- 23134 || || || || ||| |||| || || || | | ||| |||||| | || || Sbjct 3326016 CTCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGT-GCTGCTGGTT-CGACTTGGAG 3325959 Query 23135 TTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATC 23194 ||| | ||||||||||||||| | || || |||||| ||| | ||||| ||| Sbjct 3325958 TTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATG 3325899 Query 23195 GCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTT 23253 || ||| | |||| || | | ||| || ||| ||| | |||||| | Sbjct 3325898 GCGAACCAGAGCTTCTGGGCCTTGATG-GTCTTGCGACCCTTGCCAGCACGCTCGTAGCT 3325840 Query 23254 TTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGG 23313 | ||| | | ||||| || | || |||||| |||||||| | | || Sbjct 3325839 CTCGTAGAGGGTCTCAAACTCCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCGGG 3325780 Query 23314 ACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 |||||||| |||| ||| || || || |||| || || || || ||||| Sbjct 3325779 GCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCA 3325720 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 || ||||||||||| || ||||| || |||||||| |||||| |||||| || || Sbjct 3325719 GAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTC 3325660 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 | ||||| || |||||||| ||||| ||||||||||| | |||||| || || || | Sbjct 3325659 AAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCG 3325600 Query 23494 CTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCAC 23553 ||| || || ||||| |||||||| || || ||| | ||| | | ||||| || || Sbjct 3325599 CTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGGAC 3325540 Query 23554 GAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTG 23613 || ||||||||| ||| || || | ||| || || || |||| |||||| Sbjct 3325539 GATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTGTG 3325480 Query 23614 AACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTC 23673 | ||||| ||| || || || | | || || ||| ||||| || || ||||| Sbjct 3325479 GATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTC 3325420 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 |||||| || || ||| ||| || || | ||||| | ||| ||||| ||||| || | Sbjct 3325419 GTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGG 3325360 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 | || ||| |||| ||| || || || ||||||||||||||| | | |||||| Sbjct 3325359 GTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGACAT 3325300 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 || ||||| || |||| | | ||||||| || ||||| |||||||||||||| || Sbjct 3325299 GAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGGCGACACG 3325240 Query 23854 CATCATCATGTATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGA 23910 ||| ||||||| || || | || ||||| | ||||| || || || || || Sbjct 3325239 CATAATCATGTGCTGGGGACGCTCGGCGACCTT---GCCGTCGATGCGGAGGAGGTACGA 3325183 Query 23911 ACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGC 23970 || | | || || || ||||| |||| || ||||||||| |||| | ||||| Sbjct 3325182 GCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTAGATAATGGC 3325123 Query 23971 CGA 23973 ||| Sbjct 3325122 CGA 3325120 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | || Sbjct 1079054 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 1078995 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| ||| | || || |||||| Sbjct 1078994 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 1078935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || ||||| ||||| ||| | || ||| Sbjct 1078934 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGAC 1078899 >seq5 Length=2378914 Score = 206 bits (228), Expect = 2e-48 Identities = 468/692 (68%), Gaps = 24/692 (3%) Strand=Plus/Plus Query 57711 TCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACG 57770 || || || ||||| |||||||| ||||||| | || | || || || | | Sbjct 2242023 TCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCTGTGGCGAGGTCCAGATTGCC 2242082 Query 57771 GAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTAT 57830 ||||| | ||||||||| || || | || || ||| | || || || | || Sbjct 2242083 GAGGCCAAGACCTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTAC 2242142 Query 57831 TCGCTACTCATCGATACGTACGTGAAGGACAACGACGA--GAAACGTAGACTGTTCAACG 57888 ||||| |||||||| || ||| | ||||||| | | ||| || |||||||||| Sbjct 2242143 TCGCTCCTCATCGACACCTACATCCGTGACAACGCCCGCCGCAAC-TAC-CTGTTCAACG 2242200 Query 57889 CGATCGA-AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGAT---- 57943 |||| || |||| | || || ||| |||||||| || ||| | || | ||||| Sbjct 2242201 CGATTGACAACATTCCCTGC-ATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCG 2242259 Query 57944 AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTAT 58003 | ||| | | |||| |||||| | || ||||| || ||||||||||| ||||| Sbjct 2242260 GACAAG----AACTCGTCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTAT 2242315 Query 58004 ATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGG 58063 ||||| |||||| |||||| | || || ||| | ||||| ||||| || |||||||| Sbjct 2242316 CTTCTTCTCGGGCTCGTTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGG 2242375 Query 58064 CCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || ||||||| | || ||||| |||||||||||||| || || ||||| || Sbjct 2242376 TCTCACCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTG 2242435 Query 58124 CCTAATGTACTCTCACAT-TGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCA 58182 ||| ||| | | ||| | ||| || || | ||| |||| || ||| Sbjct 2242436 CCTCCTGTTCACCCACCTCCGTCGCCGCCCCCAC-CCGGACACCATCAACAGGATCATCC 2242494 Query 58183 CCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 |||||| ||||| || || | ||||| ||||||| ||||| || ||| | | | | Sbjct 2242495 GCGAGGCCGTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTG 2242554 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | |||||| | | |||| |||||||||||||||| |||||| | | |||||| Sbjct 2242555 GCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGAC---CGTCTGCTCG 2242611 Query 58303 AACTGATTGGAGAGCGTCA----TTACAACACGAAAAATCCGTTTGATTTTATGAATCTG 58358 | | | | || || ||| || || || || || || |||||| | || Sbjct 2242612 -TCGCCCTCGGCAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATG 2242670 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGA 58390 |||||||| |||||||| | ||||| ||||| Sbjct 2242671 ATCTCGCTGCAGGGCAAGGCCAACTTCTTCGA 2242702 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| ||||| || |||| || || ||||| Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||| || | || ||||||||| Sbjct 2288952 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 2289011 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| || || ||||| ||||| ||| | ||| | | || | || | | || || Sbjct 2289012 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACG-CTCTCA--GACTAC 2289068 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || || ||||| || || ||||| || | ||| | ||||| Sbjct 2289069 AACATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGG 2289118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Plus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || || ||||| || |||||| |||| || || ||||||||| | || | ||||| Sbjct 2288457 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACGTCAA- 2288515 Query 31274 CAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCT 31330 ||| || | | ||||||||| || | || ||||||||||||||||| || ||||| Sbjct 2288516 --GAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCC 2288573 Query 31331 GGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACT 31390 ||||| ||| | || ||| || | ||| || ||||| || || || |||||| Sbjct 2288574 GGCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACT 2288633 Query 31391 CTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||| | || | || |||| Sbjct 2288634 CTCCACCTTGTCCTTCGTCTCCGCGGTGGTA 2288664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 31213 TCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAA 31272 ||| || ||||| || |||||| |||| || || | || |||| | |||| | ||||| Sbjct 2288122 TCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACTATCGACAACGTCAA 2288181 Query 31273 ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGG 31332 || || ||||||||| ||| | || ||||||||||||||||| || ||||| || Sbjct 2288182 GTCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTCGCCGG 2288241 Query 31333 CAAACAGTTGGAAGAC 31348 ||| ||| | || ||| Sbjct 2288242 CAAGCAGCTCGAGGAC 2288257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || || | || || || |||| Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 2288724 GACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 2288783 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || ||| ||| | ||| || ||| Sbjct 2288784 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAAC 2288843 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || ||||| || || || || ||| | || | || |||| Sbjct 2288844 ATCCAGAAGGAGTCGACCCTGCACCTTGTCCTTCGTCTCCGTGGTGGTA 2288892 >seq3 Length=3276928 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || ||||| ||||| || || ||||| |||||| |||||||| || || Sbjct 1613787 CTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATTTTC 1613846 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| || |||| ||| |||| || |||||| | || |||||| Sbjct 1613847 TGGCTCAAGAAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTCGCGC 1613906 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGC 58124 || |||||| ||| || || ||||||||| Sbjct 1613907 GATGAGGGTACCCACACCGACTTTGCGTGC 1613936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766193833040