Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 125 1e-23 >seq5 Length=2378914 Score = 125 bits (138), Expect = 1e-23 Identities = 181/253 (72%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 2242435 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 2242376 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| || || ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 2242375 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 2242316 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGT--- 50136 || || || || ||||||||||| | || | ||| || ||| | || || ||| Sbjct 2242315 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCA-AAC-GACGAGTTCTTGTCCG 2242258 Query 50137 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 ||||| | | ||||| ||||||||||| || | || || || | || || || | Sbjct 2242257 AGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGT 2242198 Query 50195 TAAAGAGATAGTT 50207 | || || ||||| Sbjct 2242197 TGAACAGGTAGTT 2242185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268467800680