Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 109 7e-19 >seq5 Length=2378914 Score = 109 bits (120), Expect = 7e-19 Identities = 176/251 (70%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||| ||| |||||||| || | || | |||||||| || ||||| Sbjct 2242435 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 2242376 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 |||||||| || || ||||| || ||||| || || |||||||| || || || |||||| Sbjct 2242375 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 2242316 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACT-GTCATGT 42241 || || || || || |||||||| || || | ||| || | || | || ||| Sbjct 2242315 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGACGAGTTCTTGTCCGAG 2242256 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 ||||| | | ||||| ||||||||||| || | || || || | || || || || Sbjct 2242255 ATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGTTG 2242196 Query 42302 AAGAGATAGTT 42312 || || ||||| Sbjct 2242195 AACAGGTAGTT 2242185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138889598120