Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5 188 1e-42 seq2 159 5e-34 seq3 95.1 2e-14 >seq5 Length=2378914 Score = 188 bits (208), Expect = 1e-42 Identities = 361/530 (68%), Gaps = 19/530 (4%) Strand=Plus/Plus Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||||||||| ||||| |||||||| |||||| | ||||| || | ||||| || || Sbjct 2242094 CTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCGCTCCTCAT 2242153 Query 125294 TGACATGTACATTCGCGAT-----CCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 |||| ||||| || || |||| || || || || || ||||| || ||| Sbjct 2242154 CGACACCTACATCCGTGACAACGCCCGC--CGCAACTACCTGTTC---AACGCGATTGAC 2242208 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 | | || | || || ||||| | |||| | | |||||| ||| | || Sbjct 2242209 AACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCGGACAAGAAC 2242268 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || |||| ||||| | || | || || |||||||| ||||| |||||||| ||||| Sbjct 2242269 TCGTCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGC 2242328 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||||| ||||||| ||||||||||||||||| ||||||||||| || || | Sbjct 2242329 TCGTTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCC 2242388 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 |||||| | || || || |||||||| || ||| ||||||||| || ||||| | Sbjct 2242389 AACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTT---C 2242445 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | | || |||| || | || | || | ||| || || | ||| Sbjct 2242446 ACCCACCTCCGTC------GCCGCCCCCACCCGGACACCATCAACAGGATCATCCGCGAG 2242499 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 ||||| || || || ||||| || ||||| |||| || || | ||||||||| Sbjct 2242500 GCCGTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATG 2242559 Query 125709 AACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACT 125758 ||| |||||| |||||| ||||||| |||||||| || || ||||| || Sbjct 2242560 AACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCT 2242609 >seq2 Length=4282893 Score = 159 bits (176), Expect = 5e-34 Identities = 359/533 (67%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||| || ||| || | || || |||||| | ||| |||| | | || Sbjct 3325516 ACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGC 3325575 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||| || || || || || || || | ||| ||||| | || || ||| Sbjct 3325576 TACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGG 3325635 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||||||||| |||||||| | || ||||||| ||| ||| || |||| || Sbjct 3325636 CACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGT 3325695 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA---C 97043 ||| | ||| |||| || || |||||| | || || | ||||||||||| ||| | | Sbjct 3325696 GCCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCC 3325755 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 ||||||| |||||| ||| |||||||||| | || ||||| || |||| | Sbjct 3325756 GACGGTG---ACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCAC 3325812 Query 97104 GGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACG 97162 || ||||||||| || ||| | |||||||| | ||| | || |||| Sbjct 3325813 TCGGAGGAGTTTGAGACCCTCTACGAGAGCTACGAGCGTGCTGGCAAGGGTCGCAAGACC 3325872 Query 97163 AGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 | || | || | |||| || ||| |||||| | ||| ||| |||||||| | Sbjct 3325873 A-TCAAGGC-CCAGAAGCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCC 3325930 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCA 97281 | | ||| ||||||||||| ||| || ||| ||||| | ||| | || |||| Sbjct 3325931 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGTACCA 3325990 Query 97282 TCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| ||||| || ||||| || ||| | |||||| | || || |||||| Sbjct 3325991 TCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCGCCCGACGAG 3326043 >seq3 Length=3276928 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/130 (77%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 125445 GTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGA 125504 || |||||||||||||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct 1613805 GTCGAGGGCATCTTCTTCTCGGGCTCGTTTGCGGCCATTTTCTGGCTCAAGAAACGCGGT 1613864 Query 125505 CTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGG--CCTACACT 125562 ||||||| |||| |||| | |||||| | || || || || ||||| || |||| Sbjct 1613865 CTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTCGCGCGATGAGGGTACCCACAC- 1613923 Query 125563 GTGACTTTGC 125572 |||||||| Sbjct 1613924 -CGACTTTGC 1613932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058857260120