Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 104 5e-17 >seq5 Length=2378914 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| || ||||| | ||||| Sbjct 2288876 AAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTC 2288817 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || ||||| || || || || || || Sbjct 2288816 CTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC 2288757 Query 104467 CTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||| ||||| || || || || | ||| || | || ||||| || ||||| | Sbjct 2288756 CTGAATC-TTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGG 2288698 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 2288697 TCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397854165196