Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 >seq3 Length=3276928 Score = 111 bits (122), Expect = 1e-19 Identities = 224/330 (68%), Gaps = 2/330 (1%) Strand=Plus/Plus Query 5591 ATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAGTTGAAC 5650 || |||||||| | |||||||| | | | | || || | | ||| |||||||| Sbjct 1910452 ATAAGCTGCGCGACGCGGTCGCCGGCCGAGATGGCAAAGTCCTGCTCGCCATAGTTGAAC 1910511 Query 5651 AGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATG 5710 |||| || ||| ||||||||||||||||||| || ||||| || ||| |||||| Sbjct 1910512 AGCAGGACCATGACGGTGCCGCGGTAGTCGGCGTCAATGACGCCGGCACCCGTGTCGATC 1910571 Query 5711 AAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCGGGAAGC 5770 |||||||| |||| ||||| || ||||| || | | |||||| || ||||| | Sbjct 1910572 GAGTGCTTGGCCGCGAGGCCCGAACGGGGCGCTATCCTGCCGTACGTGCCCTCGGGGACG 1910631 Query 5771 TGTATCTGCAGGTCCGTGAACACCACTCGCC-GACCGCCCGCAGGGACGATGCAGTCGCA 5829 || ||| | |||| | || |||| |||| ||| || || || ||| Sbjct 1910632 GCAATGGACAGCTGCGTG-TCGACAAGCGCCTTGCCGCGCGCGGGCACCTTGATGTCCGC 1910690 Query 5830 AGCGCTGCAGAGGTCGTACCCGGCCGCCCGCGGGGACCCCCTGGTGGGGAGCGTGGCGTT 5889 |||| | | |||||||| ||||||| | || || || | ||||| ||| |||| Sbjct 1910691 AGCGGCGTACAGGTCGTAGCCGGCCGAAAGGGGCGAGCCACGCGTGGGCAGCTTGGCCGA 1910750 Query 5890 GGGGGACAGGCGGACCACGCGGAGCGCGTC 5919 || ||||||| | ||| ||||| |||| Sbjct 1910751 GGAGGACAGGAGCTTGACGAGGAGCTCGTC 1910780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054206072344