Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq3 168 1e-37 seq1 161 2e-35 seq8 111 2e-20 >seq3 Length=3276928 Score = 168 bits (186), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| |||||||| |||||||| ||||||||||| Sbjct 718641 CGCGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTGGCCCGTCGTGGTGGT 718582 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| ||||||| | |||| || |||| |||| ||| | |||||||||||| Sbjct 718581 GTCAAGCGTATCTCTGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGATCTTCCTC 718522 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || | || ||| || |||||||| || || ||||| |||||| Sbjct 718521 GAGAACGTCATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAAGACCGTCACC 718462 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | || ||||||| || | || || || ||||| | | || ||||| || Sbjct 718461 TCGCTCGACGTCGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGTTTCGG 718406 >seq1 Length=6129537 Score = 161 bits (178), Expect = 2e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || |||||||| || ||||||||||| |||||||| ||||| ||||| |||||| Sbjct 1406852 CTTCGTGACAACATCCAGGGTATCACCAAGCCCGCTATCCGCCGTCTCGCTCGCCGTGGT 1406911 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 1406912 GGTGTCAAGCGTATCTCGGGCCTCATCTACGAGGAGACCCGCGGCGTCCTCAAGATCTTC 1406971 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || | || ||| || |||||||| || || |||||||| Sbjct 1406972 CTCGAGAACGTTATCCGCGACTCGGTCACCTACACTGAGCACGCCAAGCGCAAGACTGTT 1407031 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | || ||||||| || | || || || ||||| | | || ||||| || Sbjct 1407032 ACCTCGCTCGACGTCGTCTACGCTCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 1407090 >seq8 Length=1346441 Score = 111 bits (122), Expect = 2e-20 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || ||||| ||||| ||||||||||| |||||||| ||||| ||||| ||||| Sbjct 527636 TCTTCGTGACAACATTCAAGGCATCACCAAGCCCGCTATCCGCCGTCTCGCTCGCCGTGG 527695 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| |||| || | |||| || |||| ||| | ||| | |||||||| Sbjct 527696 CGGTGTCAAGCGTATCTCCGGCCTCATCTACGAGGAGACTCGCGGTGTCCTCAAGATCTT 527755 Query 16573 C 16573 | Sbjct 527756 C 527756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075166170641