Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq5 116 5e-21 >seq2 Length=4282893 Score = 125 bits (138), Expect = 9e-24 Identities = 436/678 (64%), Gaps = 2/678 (0%) Strand=Plus/Minus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 || ||||| | | ||| || ||||| ||| || || ||||| ||||| || || ||| Sbjct 3325781 GGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATC 3325722 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 || || || || || || | || | | ||||| || || ||||| || Sbjct 3325721 CAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGG 3325662 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 || ||||| | | | || | ||||| || || | ||| ||||| | | || || Sbjct 3325661 TCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGG 3325602 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 || ||||| || ||||| || | ||| | ||||||| || || | | | ||| || Sbjct 3325601 CGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGG 3325542 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 | |||||||| || ||| |||||||||| || || || |||| ||||| || Sbjct 3325541 ACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTG 3325482 Query 63483 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 || ||||| || || || || | || ||||| ||||| || | ||| Sbjct 3325481 TGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTG 3325422 Query 63543 TCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63602 || |||||||| || ||| || || ||||| | || || || ||||| ||| Sbjct 3325421 TCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGG 3325362 Query 63603 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63662 | || || || || || || | ||| || || ||||||||||| | || || Sbjct 3325361 GGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGAC 3325302 Query 63663 AGTAGATTGTACGTCTCAATAGCTGAGTCTAT-ATCCCATTGATGAATTCCTACTGCGAC 63721 | || ||||| ||||| | | ||| || | || | || || || | ||||| Sbjct 3325301 ATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCG-TGGATACCGATGGCGAC 3325243 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGA 63781 |||||| | ||||||||| || | || ||| |||| || || | | ||| || Sbjct 3325242 ACGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGAGGTACGA 3325183 Query 63782 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63841 || | || || || ||||| |||||||| |||||||| || ||||| ||||| | Sbjct 3325182 GCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTAGATAATGGC 3325123 Query 63842 CGAGTTGAGTTTATCCTT 63859 ||||| ||| |||||| Sbjct 3325122 CGAGTCGAGAACATCCTT 3325105 >seq5 Length=2378914 Score = 116 bits (128), Expect = 5e-21 Identities = 178/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||| ||| ||||||||||| | || || |||||||| || ||||| Sbjct 2242435 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 2242376 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| || || ||||| || ||||| || ||||| || || || || || |||||| Sbjct 2242375 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 2242316 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 33480 || || || || || |||||||| || || | ||| | || || || || ||| Sbjct 2242315 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGC--AAACGACGAGTTCTTGTCCG 2242258 Query 33481 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33538 ||||| | | ||||| ||||||||||| || | || || || | || || || | Sbjct 2242257 AGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGT 2242198 Query 33539 TAAAGAGATAGTT 33551 | || || ||||| Sbjct 2242197 TGAACAGGTAGTT 2242185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946911886920