Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 394 2e-104 >seq2 Length=4282893 Score = 394 bits (436), Expect = 2e-104 Identities = 1070/1629 (66%), Gaps = 24/1629 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || ||||||||| |||| || | | ||| || || || | | | || |||||||| || Sbjct 3325315 TTTACGCACGCCTCGCCCACCCTCTTCAACGCCGGTACCCCTCACCCCCAGATGTCGTCG 3325374 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| ||| | ||||||||||| ||||| || ||||||| ||||| || |||| Sbjct 3325375 TGCTTCCTTGTCGCCATGAAGGACGACTCCATTGACGGTATCTACGACACCCTCAAGACC 3325434 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || | || ||||||| ||| ||||| || ||| | |||||||| |||| || Sbjct 3325435 TGCGCCCAGATCTCCAAGACTGCTGGCGGTATCGGTCTCCACATCCACAACATTCGCGCC 3325494 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 || | |||||| ||| || || ||||| || || | || |||||||| || Sbjct 3325495 AAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGC 3325554 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 | | || || || | ||||||||||||||||| |||||| || || ||| Sbjct 3325555 GCCTACGATGCCACCGCTCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTT 3325614 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || |||||||| || || || | ||||| || ||||| || || || ||| Sbjct 3325615 GCCATCTACCTCGAGCCCTGGCACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAAC 3325674 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| | ||||| ||||| |||||||| || || ||| | | |||| Sbjct 3325675 CACGGCAAGGAGGAGGTTCGTGCCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTC 3325734 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || |||||||| || ||||| | | ||| | ||| | ||||| ||| || || Sbjct 3325735 TTCATGAAGCGTGTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCC 3325794 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || |||| || || || | || | || ||||| | || || | Sbjct 3325795 GGCCTCGCCGACGTCCACTCGGAGGAGTTTGAGACCCTCTACGAGAGCTACGAGCGTGCT 3325854 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || |||| ||| ||||| || || |||||||| ||||| |||||| | || | ||| Sbjct 3325855 GGCAAGGGTCGCAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCCATCCTCGAGGCCCAG 3325914 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 | ||||| || |||| ||| | ||||| || | |||| |||||| |||||| Sbjct 3325915 ACCGAGACTGGTGGCCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAG 3325974 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 |||||||| ||||| || || | |||||| || || |||||||| || ||| | | Sbjct 3325975 CAGCACCTCGGTACCATCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCG 3326034 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA---- 364322 ||||||||| |||||| || |||||||| ||||| || || || || ||||| | Sbjct 3326035 CCCGACGAGGTTGCCGTCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACATT 3326094 Query 364323 -AGA-----TGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG 364376 ||| | |||| ||| || | || | ||| | | | | || Sbjct 3326095 GAGAACCAGTCGTAC----GACTTTAAGAAGCTCCACGACATTTGCAAGGTCGTCACCAA 3326150 Query 364377 CAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGC-GTTCTA 364435 || |||||| |||| || |||||| || || || ||| | || | || || | Sbjct 3326151 GAACCTCGACCAGGTCATTACCAAGAACTACTA-CCCCGTCCAGGAGGCTCGCAACTCGA 3326209 Query 364436 ATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGC 364495 | ||||| || ||||| | ||||||||||| ||||| ||||| |||| || ||| | Sbjct 3326210 ACATGCGCCACCGCCCCGTCGGTCTTGGTGTCCAGGGTCTCGCCGACGCCTTCATGGCTC 3326269 Query 364496 TCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAA 364555 || || | || || ||||| | ||||||| || || ||||||| || || | Sbjct 3326270 TCCGCCTGCCCTTCGACTCGCCCGCTGCTCGTGAGCTCAACCTCAAGATCTTCGAGACCA 3326329 Query 364556 TGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTA 364615 | || || || | ||||||||||| |||| | ||||| |||||| | Sbjct 3326330 TCTACCACGCTGCTCTCGAGGCTTCGTGTGAGATGGCCCAGGAGAAGGGCAAGTACCCCT 3326389 Query 364616 CTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAA-TGTCACG 364674 | || ||||| || || | |||||||| || ||||| || | ||||| || | Sbjct 3326390 CGTACGAGGGCTCGCCCATCTCGCAGGGCAAGCTCCAGCCCGACATGTGGAACCGTGTCC 3326449 Query 364675 CCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGC 364734 ||| | | || ||| ||||| ||| ||| ||||| || |||| ||| ||| Sbjct 3326450 CCA-CCGACCTCTGGGACTGGACCGAGCTCCGTGCCAACATTGCCCAGCACGGTGTCCGC 3326508 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 ||||| || | |||||||||||||| || || || | ||||| || || ||| Sbjct 3326509 AACTCGCTGCTCGTCGCGCCCATGCCCACTGCCTCGACCTCGCAGATTCTTGGCTGGAAC 3326568 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 |||||||| || || | || | ||||| | || || || || || || || || Sbjct 3326569 GAGTGCTTTGAGCCCTACACCTCGATGCTTTACGCCCGTCGTGTGCTCTCGGGTGACTTC 3326628 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || | || || || || | ||| ||| | |||| || Sbjct 3326629 CAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATCAACCTCGGCATCTGGGACGAGGAG 3326688 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| ||||| ||| | |||||| | ||| ||||||| |||| || Sbjct 3326689 ATGAAGAACCTCATCATTGCCTCGGGTGGTTCCATCCAGCACATTCCCAACATTCCCGAC 3326748 Query 364975 GATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC-CATGCGAA--CTCTCATTGAT 365031 || |||||| | || ||||| || || ||||| |||| || ||| || ||||||| Sbjct 3326749 GAGCTGAAGGCCATCTACAAGACTGTCTGGGAGGTTTCGCA---GAAGGCTGTCATTGAC 3326805 Query 365032 ATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACT 365091 | || ||||| || || || || ||| ||| |||||| | ||| | | || | Sbjct 3326806 CTCGCCGCCGACCGTGGCGCGTTCATCGACCAGTCGCAGTCGCTCAACATCCACCTGTCC 3326865 Query 365092 CAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAG 365151 | || | | | | |||| || || ||||| |||||||| ||||| |||||| ||| Sbjct 3326866 AACCCCTCGTTCTCGCAGCTCACCTCGATGCACTTCTACGGCTGGAAGCGCGGTCTCAAG 3326925 Query 365152 ACAGGTGCC 365160 || |||||| Sbjct 3326926 ACTGGTGCC 3326934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352982128934