Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 147 2e-30 seq2 134 1e-26 seq3 102 8e-17 >seq5 Length=2378914 Score = 147 bits (162), Expect = 2e-30 Identities = 329/483 (68%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| |||||||||| | | |||||| || | | || | || ||||||||| Sbjct 2242227 AAGAAGGCCGACTGGGCCCTCCACTGGATCTCGGACAAGAACTCGTCGTTTGCCGAGCGT 2242286 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 | | |||||||| || ||||| |||| || || ||| ||||| ||||||| Sbjct 2242287 CTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTTTGCGTCCATCTTC 2242346 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | |||| || | || | |||||||||| || || || ||||||||| || ||||| Sbjct 2242347 TGGCTCAAGAAGCGCGGTC-TCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCGCG 2242405 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCA-CGACA 46336 |||||||| || || || |||||||| || ||| || | ||| | | | | || | Sbjct 2242406 TGACGAGGGTCTCCACACCGACTTTGCCTGCCTC--CTGTT-CACCCACCTCCGTCGCC- 2242461 Query 46337 AGCTTGCGCCCG-ACACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAG 46395 || | |||| ||||| | || || || ||||| || ||||||||| ||||| Sbjct 2242462 -GCCCCCACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCCATTGAGCAGGAG 2242520 Query 46396 TTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGAC 46455 || | || | ||| || |||| | || | ||||||||||| || |||||| | Sbjct 2242521 TTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATGAACGCCAAGCTCATGTGCCAG 2242580 Query 46456 TACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC-CGAAGCATTTTCA 46514 ||||| |||||||| || ||||| |||||||| | | || || | |||| | | Sbjct 2242581 TACATTGAGTTTGTCGCCGACCGTCTGCTCGT-CGCCCTCGGCAACGACAAGCTGTACGA 2242639 Query 46515 CGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTT 46574 | || ||| || || || |||||| | | ||||| ||| ||||||| | || || || Sbjct 2242640 CTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCCAACTTCTT 2242699 Query 46575 CGA 46577 ||| Sbjct 2242700 CGA 2242702 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| ||| || || | || | |||||||||||| ||||||||||| || Sbjct 2289119 GCCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGA 2289060 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| ||||||||||| ||| |||| | ||||||||||| ||||| Sbjct 2289059 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 2289000 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||||| | || | || |||| ||||||| Sbjct 2288999 GATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGAC 2288940 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| |||| || || ||||| | || || ||||| |||||||| Sbjct 2288939 CTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | ||||||||||| || |||||||| ||| Sbjct 2288662 CCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2288603 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| | || | |||||||||||| || || Sbjct 2288602 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGA 2288543 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| ||||||| Sbjct 2288542 ATACCCTCCTTGTCCTGGATCTTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACC 2288483 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | ||| || ||||| || Sbjct 2288482 TCGAGGGTGATGGTCTTGCCGGTGAG 2288457 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | |||||||||||| || |||||||| ||| Sbjct 2288890 CCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2288831 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 2288830 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 2288771 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || || | ||||||| Sbjct 2288770 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 2288711 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || ||||| || || || ||||| |||||||| Sbjct 2288710 TCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| |||| | |||||||||||| || ||||| || || || Sbjct 2288257 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTT 2288198 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| ||| ||||| | || | ||| || | |||||||| |||| ||| | Sbjct 2288197 GTCCTGGATCTTCGACTTGACGTTGTCGATAGTGTCCGAGGACTCGACCTCGAGGGTGAT 2288138 Query 131199 GGTTTTACCGGTTAGA 131214 ||| || ||||| ||| Sbjct 2288137 GGTCTTGCCGGTGAGA 2288122 >seq2 Length=4282893 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | |||||||||||| || |||||||| || Sbjct 1078828 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1078887 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||| || ||| Sbjct 1078888 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1078947 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | |||||||| Sbjct 1078948 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1079007 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || ||||| |||||||| Sbjct 1079008 TCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 1079054 >seq3 Length=3276928 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || || || | || | |||||||||||| || |||||||| || Sbjct 2414505 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2414446 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 2414445 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2414386 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||| | Sbjct 2414385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 2414326 Query 131188 TCGACGGTAACGGTTTTACCGGTTAG 131213 |||| ||| | || ||||| || || Sbjct 2414325 TCGAGGGTGATCGTCTTACCCGTAAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012581694080