Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 116 5e-21 seq2 104 3e-17 >seq5 Length=2378914 Score = 116 bits (128), Expect = 5e-21 Identities = 178/253 (70%), Gaps = 7/253 (3%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || ||| ||| ||||||||||| | || | |||||||| || ||||| Sbjct 2242435 CAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGA 2242376 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 |||||||| || || ||||| || ||||| || ||||||||||| || || || ||||| Sbjct 2242375 CCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAG 2242316 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 32837 || || || || || |||||||| || || | ||| | || || || || ||| Sbjct 2242315 ATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGC--AAACGACGAGTTCTTGTCCG 2242258 Query 32838 --ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | | ||||| ||||||||||| || | || || || | || || || | Sbjct 2242257 AGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCAATCGCGT 2242198 Query 32896 TAAAGAGATAGTT 32908 | || || ||||| Sbjct 2242197 TGAACAGGTAGTT 2242185 >seq2 Length=4282893 Score = 104 bits (114), Expect = 3e-17 Identities = 442/696 (64%), Gaps = 2/696 (0%) Strand=Plus/Minus Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || || || | || ||||| | | ||| || ||||| ||| || || ||| Sbjct 3325799 AGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTC 3325740 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || ||||| || || ||||| || || || || || | || | | ||||| || Sbjct 3325739 ATGAAGAGGTCGGGGATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTG 3325680 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || ||||| || || ||||| | | | || | ||||| || || | ||| Sbjct 3325679 CCGTGGTTCTTGCGCAGGTCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAG 3325620 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||||| || ||||| || | ||| | ||||||| || Sbjct 3325619 ATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCG 3325560 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 || | | | ||| || | ||||| ||||| ||| ||||| || | || || Sbjct 3325559 TAGGCGCGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAG 3325500 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || |||| ||||| || || ||||| || || || || | || ||||| Sbjct 3325499 CCCTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGG 3325440 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| || | || || ||||| || || || || ||| ||||| | || Sbjct 3325439 GCGCAGGTCTTGAGGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGG 3325380 Query 63440 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGA 63499 || || ||||| ||| | || || || || || || | ||| || || ||||| Sbjct 3325379 AAGCACGACGACATCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGC 3325320 Query 63500 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTG 63558 ||||| | || || | || ||||| ||||| | | ||| || | || | Sbjct 3325319 GTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCG 3325260 Query 63559 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTT 63618 || || || | ||||||||||| | ||||||||| || | || ||| |||| || Sbjct 3325259 -TGGATACCGATGGCGACACGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTC 3325201 Query 63619 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63678 || | | ||| || || | || || || ||||| |||||||| |||||||| Sbjct 3325200 GATGCGGAGGAGGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTC 3325141 Query 63679 TCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714 || ||||| ||||| |||||| ||| |||||| Sbjct 3325140 ACGGTCGTAGATAATGGCCGAGTCGAGAACATCCTT 3325105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631706945200