Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 120 3e-22 >seq5 Length=2378914 Score = 120 bits (132), Expect = 3e-22 Identities = 282/419 (67%), Gaps = 10/419 (2%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||||||||| || | ||| ||||| || || || | ||| ||| ||| || | Sbjct 2242436 GCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAG 2242377 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| || | || || || ||||||||||| || || || ||||| || || || || Sbjct 2242376 ACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAA 2242317 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-- 93268 ||||| || ||||| ||||| || | | ||| |||||||| | || || || Sbjct 2242316 GATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAA---CGACGAGTTCTTGTC 2242260 Query 93269 -CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAG 93326 |||||| | | ||||| ||||| || ||||| || | ||| | |||| || || | Sbjct 2242259 CGAGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGC-AGGGAATGTTGTCAATCG 2242201 Query 93327 CGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAAT 93386 |||| || ||||| | || | | || || ||||| || ||||| | || || | Sbjct 2242200 CGTTGAACAGGTAGTTGCGGCGGGCGTTGTCACGGATGTAGGTGTCGATGAGGAGCGAGT 2242141 Query 93387 ACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC-TAGCTTCC 93445 | | || || || | |||||||| || ||||| ||||| ||| || | || || Sbjct 2242140 AGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAGCCGTA-AAAGGTCTTGGCCTCG 2242082 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | ||||| || || | | || | ||| || || || || ||||| || || || || Sbjct 2242081 GCAATCTGGACCTCGCCACAGAAACGCTCGACCAGGTTCTCGTTGACAATGCCGTCAGA 2242023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860542451880