Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 197 3e-45 seq1 116 8e-21 seq5 114 3e-20 >seq2 Length=4282893 Score = 197 bits (218), Expect = 3e-45 Identities = 416/613 (68%), Gaps = 22/613 (4%) Strand=Plus/Minus Query 218502 CAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATG 218557 ||| |||||| ||| ||||| || |||||||||||||||| ||||| |||| | Sbjct 1616045 CAAGATCCCCATCCAGGACTTTGTCAACAAGGAGCTCATTCTCTTCTCCATGGCGG-ACA 1615987 Query 218558 ATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCC 218617 | | ||||| |||||| || | || || |||||||| ||||| ||| | | Sbjct 1615986 ACATT---CGTTCCATTCCCTCGGTCGCCGACGGTCTCAAGCCTGGTCAGCGCAAGGTTC 1615930 Query 218618 TCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCT 218673 | ||||| || ||||| ||||| |||||| || |||||||||||| || Sbjct 1615929 TTTTTGCGTGCTTTAAGCGTAACCT----CAAGAAGGAGATCAAGGTCGCTCAGCTTGGA 1615874 Query 218674 GGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTG--CAGGGTGCCA 218731 |||||||| ||||||| ||| ||||| |||||||| ||| |||| || | ||| Sbjct 1615873 GGTTATGTTTCCGAAAACACTGCATACCACCACGGTGAACAGTCTCTGTTCATG--ACCA 1615816 Query 218732 TTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACG 218791 |||| || | || ||| | | ||| || || |||||| | ||| |||| |||||||| Sbjct 1615815 TTGTCGGTCTTGCGCAGAAGTTTGTCGGTAGCAACAACGTTAACCTGCTCGACCCCAACG 1615756 Query 218792 GTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTA 218851 | ||||| ||| | ||| | |||||| |||||| ||| || | || |||| | Sbjct 1615755 GACAGTTCGGTACGCGTATTCAGGGTGGTAAGGATGCTGCGAGCGCTCGTTACATCTACA 1615696 Query 218852 CAAAGTTGTCGCCCGTGACGCGCCAGGT-GTTCAATCAGGCCGATGATGTGCTCCTTAAG 218910 | || | | | | |||| | | | | |||| || ||||| ||| ||| || || Sbjct 1615695 CCAACATTCCCCGCATGACCCACACGATCTTTCACTC-TGCCGACAATGCGCTTCTCAAC 1615637 Query 218911 TATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTT 218970 || |||| || ||||| || ||||| || | || |||| | | || | Sbjct 1615636 TACCTTGTTGATGATGGCCAGAGCATCGAGCCTGAATTCTACCTGCCCACCGTCCCCATG 1615577 Query 218971 TTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCTTCTTAC 219030 ||||||| ||||||||| | |||||||| || || | |||||| || || ||| Sbjct 1615576 GTGCTCGTCAATGGTGCCGACGGTATCGGTACCGGTTGGAGTACTTCGATCCCCAACTAC 1615517 Query 219031 AATCCCAAGGACATCATTGACAACGTCAAGCGTCTCATATCTGGCAAGGAGATGGTACCG 219090 || ||| |||||| | |||||| || || || || |||| |||||||||| || Sbjct 1615516 AACCCCGTCGACATCGTGGACAACCTCCGCCGCCTGATGCGTGGCGAGGAGATGGTCCCC 1615457 Query 219091 ATGTCTCCGTGGT 219103 ||| ||||||||| Sbjct 1615456 ATGACTCCGTGGT 1615444 >seq1 Length=6129537 Score = 116 bits (128), Expect = 8e-21 Identities = 140/188 (74%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| |||| ||||| ||| |||| |||||||| || |||| |||| || ||||||||| Sbjct 5521195 GTCCTTGGTCCCAACGGTTCGGGCAAGTCTACTCTTGTCAAGCTCCTTACCGGCGAGACC 5521254 Query 280233 CAGGCCA--CTGAGGGGT-CCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| || | ||| |||| |||||||| || ||| | || | |||||| || Sbjct 5521255 GAGCCCAACCTTGGCGGTACCGTCTGGAAGCACCCTAACCTCGTCATTGGTTACGTTGCC 5521314 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 |||||||||||||||||||| || | ||||| ||| |||||| | | ||||| | Sbjct 5521315 CAGCACGCTTTCCACCACATTGACCAGCACCTCGACTCGACTCCCCTCGAGTACATGCTC 5521374 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 5521375 TGGCGTTA 5521382 Score = 107 bits (118), Expect = 4e-18 Identities = 430/669 (64%), Gaps = 26/669 (4%) Strand=Plus/Minus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCC 279761 || || ||||||||||||||||||||||| | || | || ||||| || | | ||| Sbjct 896664 TCGCTTTCGGGTGGTTGGAAGATGAAGCTCGAGCTTGCCCGTGCCATGCTTATCGGCGCC 896605 Query 279762 GATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTA 279821 || | || || || || ||||| ||||||||| ||||| | | ||| || ||||| Sbjct 896604 GACATTCTCCTCCTCGACGAGCCTACCAACCACTTGGACGTCCAGACCGTCGCTTGGCTT 896545 Query 279822 GTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGC 279881 | |||||| |||| || | | | | | | || ||||| ||||||||||| Sbjct 896544 GAAAACTACCTCACCAACCTCCCCACCATGACCTGCATGATCGTCTCGCACGACTCTGGT 896485 Query 279882 TTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAG 279941 ||||| || ||| || | | ||| || ||||| ||| || ||||||| || | Sbjct 896484 TTCCTTGACAACGTCTGTACCGACATTATCCACTACGAGAGCAA---GAAGCTCGCCTAC 896428 Query 279942 CACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCG---CCCTGAGGCGGCCGCCTACTAT 279998 || ||||||||| || || || | |||| ||| ||||| | ||||| Sbjct 896427 TACCGCGGCAACCTCTCCAAGTTTGTCG---AGCGTGTCCCCGAGGCCAAGTCGTACTAC 896371 Query 279999 GACCTGAAGGACGCCACCGC---CAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGC 280055 ||| | |||||| | ||||| |||||| || || || | || Sbjct 896370 ACCCTC---GCTGCCACCTCGATCAAGTTTACCTTCCCTCCCCCCGGTAACCTTGTCGGT 896314 Query 280056 ATCACATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAAT 280115 || || || ||| || ||| | |||||| || | | || | || ||| | Sbjct 896313 GTCCGCTCCAACACTCGTGCCATCCTCAAGCTCTCGAACGCCACTTTCACCTACCCCGGT 896254 Query 280116 GG-CCCCAAC-----ATCTTCAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATT 280169 | |||| | |||| || | | ||||| |||| | || || | Sbjct 896253 GCTCCCCGGCCCTCGATCTCCAACGCCACCTGCTCGC---TTTCGCTCTCGTCGCGTGTC 896197 Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| |||||||| ||||| ||||| ||||| |||| ||||| ||| Sbjct 896196 GGTATCGTCGGCCCCAACGGTGCGGGCAAGTCGACCCTCATCAAGCTCCTCACTGGTGAG 896137 Query 280230 ACCCAGGCCACTG-AGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGC 280288 ||| | || | | |||| || || ||||| || | || | | |||||| || Sbjct 896136 ACC-ATTCCTCAGGAGGGTTCGGTCCACAAGCACCCGGCTCTCCGTGTCGGTTACGTTGC 896078 Query 280289 TCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCA 280348 |||||||| |||||||||||| | ||||| |||| |||| | ||| ||||| || Sbjct 896077 CCAGCACGCCTTCCACCACATCAACCTTCACCTCGACAAGACTGCCGTCCAGTACATCCA 896018 Query 280349 GTGGCGCTA 280357 |||||| || Sbjct 896017 GTGGCGTTA 896009 Score = 96.9 bits (106), Expect = 7e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 ||||| || ||||||||||||||||||||||| ||||| | |||||||| || | Sbjct 5520718 GGTTCGCTTTCGGGTGGTTGGAAGATGAAGCTCGCCCTTGCCCGCGCCATCCTGTTCAAG 5520777 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| | || || || || ||||| || |||||| ||||| |||||| ||||| Sbjct 5520778 GCCGACATTCTCCTCCTCGACGAGCCCACTAACCACTTGGACGTTGTCAACGTCACCTGG 5520837 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | |||||| ||| || | | | | || |||| ||||| |||||||| Sbjct 5520838 CTCATCGACTACCTCACCTCGCTCACCACCTGTACCTCGATCATGGTCTCGCACGACTCG 5520897 Query 279879 GGCTTCCT 279886 | |||||| Sbjct 5520898 GACTTCCT 5520905 >seq5 Length=2378914 Score = 114 bits (126), Expect = 3e-20 Identities = 291/435 (67%), Gaps = 6/435 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| | |||||| |||||||||||||| | Sbjct 2242702 TCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGCC 2242643 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | | |||| ||||| | ||| || || |||| | ||||| || |||||||| | Sbjct 2242642 GAGTCGTACAGCTTGTCGTTGCCGAGGGCGACGAGCAGACGGTCGGCGACAAACTCAATG 2242583 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACA-AGGAATTGCCTCACAGAT 251741 ||||| | ||| || | | |||||||||||| | ||||| || | || || || Sbjct 2242582 TACTGGCACATGAGCTTGGCGTTCATGCCAATGA-GCGACACGGGGAGGGCGTCGGTGAG 2242524 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCA-CCTGTGCCAGAGACA 251800 ||| |||| || |||| || ||||| | || || | ||| | | | Sbjct 2242523 GAACTCCTGCTCAATGGCGACGGCCTCGCGGATGATCCTGTTGATGGTGTCCGGGTGGGG 2242464 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 || | || | | | ||||||| | |||| | ||| ||||||||||| | Sbjct 2242463 GC-GGCGACGGAGGTGGGTGAACAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCAC 2242405 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 | ||||| ||||||||| | || || ||||| | || || ||| ||||||||| Sbjct 2242404 GCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGA 2242345 Query 251921 AGATTG-CGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 |||| | ||| ||| || || ||||| | | ||||||||| | | || | || Sbjct 2242344 AGATGGACGC-AAACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGAGA 2242286 Query 251980 CGCTCAGCAAACGAC 251994 ||||| ||||||||| Sbjct 2242285 CGCTCGGCAAACGAC 2242271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836312741117