Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 168 1e-36 seq5 167 4e-36 seq1 167 4e-36 seq3 131 3e-25 >seq2 Length=4282893 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 1078828 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1078887 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 1078888 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1078947 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1078948 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1079007 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || |||||||| ||||||||||| ||||||||| || Sbjct 1079008 TCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCATTCTG 1079058 Score = 132 bits (146), Expect = 9e-26 Identities = 465/716 (65%), Gaps = 10/716 (1%) Strand=Plus/Plus Query 175974 CCCTTGAACCCCCGATACCAAGGGGTCATTGGGAGCATCGTCTCGTTGTTAATGAGGCGC 176033 |||||||| || || |||| || ||||| |||| |||| |||| || ||||| Sbjct 1615428 CCCTTGAAACCACGGAACCACGGAGTCATGGGGACCATCTCCTCGCCACGCATCAGGCGG 1615487 Query 176034 TTCACATTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATCCTGTT 176093 | ||||| ||||| || ||||||||| || || ||| || | || || Sbjct 1615488 CGGAGGTTGTCCACGATGTCGACGGGGTTGTAGTTGGGGATCGAAGTACTCCAACCGGTA 1615547 Query 176094 CCTATTCCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGGT 176153 || || || | ||||| || || | | |||| |||||| | ||| |||| || Sbjct 1615548 CCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAATTCAGGC 1615607 Query 176154 TCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAGACGC-TCGTCGGCCTTGTGGAA 176212 || || | | ||| ||||| | |||||||| || || ||| | |||||| ||| || Sbjct 1615608 TCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAG-CGCATTGTCGGCAGAGTGAAA 1615666 Query 176213 AATATCCCGGGTGTTG-GGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCT 176271 || |||| || ||||| |||| ||| |||| || | ||| |||| |||| Sbjct 1615667 GATCGTGTGGGTCATGCGGGGAATGTTG-GTGTAGATGTAACGAGCGCTCGCAGCATCCT 1615725 Query 176272 TGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCG 176331 | || || |||| || | |||||| |||||| || |||| || | ||| || Sbjct 1615726 TACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTGTTGC 1615785 Query 176332 AACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGA--GAGACGCCTCGCCGTG 176389 ||| || | | || || | ||||| |||| | || | ||||| || ||||| Sbjct 1615786 TACCGACAAACTTCTGCGCAAGACCGACAATGGT--CATGAACAGAGACTGTTCACCGTG 1615843 Query 176390 GTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTAC 176449 ||| || | | ||| || || || ||| ||| ||||| ||||| || | Sbjct 1615844 GTGGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTCCTTCTT 1615903 Query 176450 GAGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGAC 176509 |||||| ||||| || || || |||| ||| ||||| ||||| ||||| ||| | Sbjct 1615904 GAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGACCGTCGGC 1615963 Query 176510 GACCGACGGAATGGAACGCTCTACATCGTATCTTGAAAAAAGGATAAGGTCTTTGTTTAT 176569 |||||| ||||||||||| || | || || || || || || ||||| | Sbjct 1615964 GACCGAGGGAATGGAACGAATGTTGTCCGCCATGGAGAAGAGAATGAGCTCCTTGTTGAC 1616023 Query 176570 GAAATCCTCCACTGGAATCTTCGTGAGCTTC-TGGTCGAGCTGGTTGCCAGGCTCGAAAT 176628 || |||| | || ||||| || | || |||||||| | |||| |||| ||| | Sbjct 1616024 AAAGTCCTGGATGGGGATCTT-GTCGGTGTCGTGGTCGAGGAAGGTGCCGGGCTTGAACT 1616082 Query 176629 CAAGGAGCCACGTCTTCCGTTCGTCCGCCCGAGACTTGTTGAAAGACTTGTCAATG 176684 | | |||||| ||| || ||||| ||| |||||| || | | |||| ||| Sbjct 1616083 GACGAAGCCACTCCTTGCGGTCGTCGGCCTTCTTCTTGTTAAATGCCATGTCGATG 1616138 Score = 109 bits (120), Expect = 1e-18 Identities = 1087/1738 (63%), Gaps = 65/1738 (4%) Strand=Plus/Minus Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979 ||| | |||||| | |||| || ||||| || || ||||||||||| | |||| || Sbjct 3326844 CTGCGACTGGTCGATGAACGCGCCACGGTCGGCGGCGAGGTCAATGACAGCCTTCTGCGA 3326785 Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGC---TCAGGGTGGATGCCAATGACACG 31036 | |||||| | ||||||||||| ||||| ||| || || | || |||| | Sbjct 3326784 AACCTCCCAGACAGTCTTGTAGATGGCCTTCAGCTCGTCGGGAATGTTGGGAATG---TG 3326728 Query 31037 TTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACG 31096 |||||||| || || |||||| || |||||||||| ||||| ||| |||| | Sbjct 3326727 CTGGATGGAACCACCCGAGGCAATGATGAGGTTCTTCATCTCCTCGTCCCAGATGCCGAG 3326668 Query 31097 AGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCG 31156 ||||||||| || | ||| || | ||| || |||| || || | || || Sbjct 3326667 GTTGATGAGGTCACGGAGGAGCCAGGGGCAGACGACCTGGAAGTCACCCGAGAGCACACG 3326608 Query 31157 GCGGCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGC--AG-ATTTG 31213 ||| ||| || | || ||| |||| || || | || || || || || || || Sbjct 3326607 ACGGGCGTAAAGCATCGAGGTGTAGGGCT-CAAAG-CACT-CGTTCCAGCCAAGAATCTG 3326551 Query 31214 CGCGGTGGATGCGGTGGGCATCAGCGCGGTGGTCAGCGAATTCCTGACACCCTTCTTGAC 31273 || ||| || || |||||||| ||||| | |||||| || | |||||| | || | Sbjct 3326550 CGAGGTCGAGGCAGTGGGCATGGGCGCGACGAGCAGCGAGTTGCGGACACCGTGCTGG-- 3326493 Query 31274 GCGCTCTT----CGAGGGTC-TTCCAGT--CAAGGCGAGTTACCGGCTCGGTTCCCCAGA 31326 || | || || | || |||||| || | | | | | ||||| ||| | Sbjct 3326492 GCAATGTTGGCACGGAGCTCGGTCCAGTCCCAGAGGTCGGTGGGGACACGGTT--CCACA 3326435 Query 31327 GGTGATACTGCATCACACCACGAGACGCGGGAGACCCCTCAAAGGTAGGATGGGGA---- 31382 || ||| | | || | || ||| || ||||| ||| || ||| | Sbjct 3326434 TGTCGGGCTGGAGCTTGCCCTGCGAGATGGGCGAGCCCTC----GTACGAGGGGTACTTG 3326379 Query 31383 CCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCTGCAAAGTAAATATTCTCAAAG 31442 || | ||| | || | || || || ||||| | || || ||| || |||| ||| Sbjct 3326378 CCCTTCTCCTGGGCCATCTCACACGAAGCCTCGAGAGCAGCGTGGTAGATGGTCTCGAAG 3326319 Query 31443 ATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAAGGCATGCGCAGCTTGAAGAAC 31502 || | ||||||| | || ||| ||||| || |||| ||| || | ||| Sbjct 3326318 ATCTTGAGGTTGAGCTCACGAGCAGCGGGCGAGTCGAAGGGCAGGCGGAGAGCCATGAAG 3326259 Query 31503 ACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGCCGGCGCATGTTACTAGTCTTC 31562 |||| |||||||||||||| | || | ||||| |||||||||| | ||| | | Sbjct 3326258 GCGTCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTT-CGAGT-TGC 3326201 Query 31563 --GCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTGTCGAGGTTCTTGGCCAGAA 31620 ||||| | | | |||| | | | |||| || |||||||||||||| | | Sbjct 3326200 GAGCCTCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGACGA 3326141 Query 31621 TCTT-CACGTGCTTGCGAAGGTCCTCAAAGTCGTAGGCACCGTTC------TTGACGTAG 31673 ||| || || | | | || | || ||||||||| | |||| | ||| || Sbjct 3326140 CCTTGCAAATG-TCGTGGAGCTTCTTAAAGTCGTACGACTGGTTCTCAATGTCGACAAAG 3326082 Query 31674 TTCTGGAGGACGATGCTTCCAATGACACACACCGCCGTTTCGTCCGTAGAAGTGTATTCG 31733 ||||| | || ||| | || || || ||||| | || | ||| ||| Sbjct 3326081 GCAGGGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCG 3326022 Query 31734 ACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGCATGTT---C 31790 | |||||| | || || ||| | ||||||| ||| | |||| ||| | Sbjct 3326021 ATAATCTCAGTGCAGAGGTTGGACGACTTGATGGTACCG---AGGTGCTGCTGGTTCGAC 3325965 Query 31791 TTCACGTTCACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTGCGTGATG 31850 || ||| || |||||||| ||||| | | || || |||||| |||| | | Sbjct 3325964 TTGGAGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCG 3325905 Query 31851 ATCATCGCATTCCAGACATCGCGCGCTTTGA-CGACTTTCTTCGCACGCC-CCTCGGACT 31908 | || || ||||| | | || |||| | ||| | | | ||| | || || Sbjct 3325904 AGGATGGCGAACCAGAGCTTCTGGGCCTTGATGGTCTTGCGACCCTTGCCAGCACG--CT 3325847 Query 31909 CGTAGCGAAGATACAGGTCCTCGTACTCCTTGCCAAAGG-CATCGGTTAGACCGGGACAC 31967 |||||| || ||| ||| ||||| | | | || | |||| || ||||| ||| Sbjct 3325846 CGTAGCTCTCGTAGAGGGTCTCAAACTCC-TCCGAGTGGACGTCGGCGAGGCCGGGGCAC 3325788 Query 31968 TCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACAGGTCG 32027 || |||| | ||| | ||| | | |||||||| || ||||||||||| |||||| Sbjct 3325787 TCGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCG 3325728 Query 32028 TTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGTTACGT 32087 | ||| | ||||| ||||| | | ||| || ||||| || ||||| Sbjct 3325727 GGGATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTG 3325668 Query 32088 CGGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCGAAAGAT 32147 || || |||||||| | || ||| | ||| |||||||||||| | ||| || | Sbjct 3325667 CGCAGGTCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCA 3325608 Query 32148 CCCTTGCG---GCGACCCCCCTGGTTTGCGTATGCAGATGTCGTGTCGTACACCTTCAGC 32204 || ||| | ||| ||||||| |||| || || | ||||| | ||| Sbjct 3325607 CCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGC 3325548 Query 32205 ATGGGTACGATGCCATCAGACTCGCCATTGGTCCCCTGGATCTTGGAACCACGGCCGCGA 32264 ||||| ||||| || | || | || ||||| || || | || || | ||||| Sbjct 3325547 ATGGGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGA 3325488 Query 32265 ATGTCGCTCAGGTGCAGGCCGATGCCGCCACCAAACTTGGAAAGCTGTGC-AACGTCACC 32323 |||| | | ||| || ||||| |||||| || |||||| | ||| || | ||| Sbjct 3325487 ATGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTC-TT 3325429 Query 32324 AAGAGACTTGAAGATGTTGGTGAGCGAGTCATC---CACGTGGACAAGGAAACAGCTTGC 32380 || | | | |||| | | ||||| || || | ||||||||| || | Sbjct 3325428 GAGGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGA 3325369 Query 32381 AAGATTGGCATTTCTGAACCCTGCATTGAACAGGGTCGGGCTCGCATGCGTGAACTTGCG 32440 | | || | | || || ||||| ||||| || || ||||| || | || Sbjct 3325368 CATCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACG 3325309 Query 32441 CTTGGA-AAGAGCATCGTAGGTTTCCTTCACCTTCGCGATGTCTTCTCCCCAGAGAGCGA 32499 || || | ||| | |||||| || ||||| | |||| || || || | ||| Sbjct 3325308 CTCCGACATGAG-GTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGA 3325250 Query 32500 TCGCCACGCGCAAATACGTGTGCTGGGGGCGCTCTACGACCTTGCCATCCACCTTGGTCA 32559 | || || |||| | | |||||||||| ||||| |||||||||| || | | | Sbjct 3325249 TGGCGACACGCATAATCATGTGCTGGGGACGCTCGGCGACCTTGCCGTCGATGCGGAGGA 3325190 Query 32560 GGTAGAGGCGCTTCATGGTTGAGAAGCCAAAGTAGTCAAAGTCATAGTCGCGGTCGTA 32617 |||| ||||| | ||| |||||||||||||| | | |||| |||||||| Sbjct 3325189 GGTACGAGCGCTCGAGGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTA 3325132 >seq5 Length=2378914 Score = 167 bits (184), Expect = 4e-36 Identities = 321/468 (69%), Gaps = 4/468 (1%) Strand=Plus/Minus Query 9937 TGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGA 9996 |||| |||| ||| ||| |||| || || |||||||||||||| |||||||| | Sbjct 2242737 TGACACCCGACTTGGAGTAGGCCGAGACACGCGACTCGAAGAAGTTGGCCTTGCCCTGCA 2242678 Query 9997 GGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGA 10056 | || || | |||||| ||||| |||||||| | | | | || ||||| || |||| Sbjct 2242677 GCGAGATCATCTCCATAAAGTCGAAGGGGTTGGCCGAGTCGTACAGCTTGTCGTTGCCGA 2242618 Query 10057 GTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCA 10116 | || || | ||||| || || ||||| |||||||||| ||| || | | ||||| Sbjct 2242617 GGGCGACGAGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCA 2242558 Query 10117 TGCCAATCATGCGGCA-GGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCT 10175 ||||||| | ||| || ||||| ||||||| | ||| |||| || ||||||| || Sbjct 2242557 TGCCAATGA-GCGACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCC 2242499 Query 10176 TCCTCGACGATGCTCTTTACCACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAATACAGG 10235 || || ||| || || | ||| || | | ||| | | ||||| Sbjct 2242498 TCGCGGATGATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGG 2242439 Query 10236 AGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCC 10295 || |||| | |||||| |||||||| || ||||| ||||||||| || Sbjct 2242438 AGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTG 2242379 Query 10296 AGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCGGAGAA 10354 |||||||||||||| || || || |||||||| |||| |||| ||||| || ||||| Sbjct 2242378 AGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCA-AACGAGCCCGAGAA 2242320 Query 10355 CAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA 10402 | | |||||| ||| | |||||| ||| ||||| || || || Sbjct 2242319 GAAGATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA 2242272 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || |||||||| || |||||| Sbjct 2288890 CCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2288831 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || ||| Sbjct 2288830 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 2288771 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||||||| ||||||||||| | || || || Sbjct 2288770 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACC 2288711 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| || || ||||||||||||||||| |||||||| Sbjct 2288710 TCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || || || || | |||| ||| || || ||||| || || ||||| Sbjct 2289127 TTTTACTGGCCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTG 2289068 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || ||||| || | || || || | |||||| |||||||| || || | || ||| Sbjct 2289067 TAGTCTGAGAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGG 2289008 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 ||||| || || || |||||||| || ||||| | ||||||| || |||||||| | Sbjct 2289007 TCGGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAC 2288948 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || || | || || || || || || | |||||||||||| |||||||| Sbjct 2288947 GACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 >seq1 Length=6129537 Score = 167 bits (184), Expect = 4e-36 Identities = 678/1040 (65%), Gaps = 39/1040 (4%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| | ||| ||| ||| ||||| | ||||| ||||||||| Sbjct 5521382 TAACGCCAGAGCATGTACTCGAGGGGAGTCGAGTCGAGGTGCTGGTCAATGTGGTGGAAA 5521323 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAG-AGCCCCGAG- 225095 || |||||||| ||||| | ||| | ||| || |||||||| || | | | || || Sbjct 5521322 GCGTGCTGGGCAACGTAACCAATGACGAGGTTAGGGTGCTTCCAGACGGTACCGCCAAGG 5521263 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||||||||| |||| ||||| || |||| |||||||| ||| ||||| Sbjct 5521262 TTGGGCTCGGTCTCGCCGGTAAGGAGCTTGACAAGAGTAGACTTGCCCGAACCGTTGGGA 5521203 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGAT-CT- 225212 |||| ||| ||| || || || | | ||||| ||| | | | | ||| | || Sbjct 5521202 CCAAGGACGGCAACACGCGACGAGAGCGAGACCTGGAGGTTGATG-TCCCAAAGCTGCTG 5521144 Query 225213 CA-GGGC-CAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTCCTT 225270 || |||| || |||| || || || || ||| | || | ||||| Sbjct 5521143 CACGGGCGCACCGGGGTACTGGAACGCGACCTGCTTCATCTTGAGGAGCGACTTCTCCTT 5521084 Query 225271 GGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTG--GT-CACCGCGTC 225327 || | | ||| || |||| ||| | ||||| ||||| || | | ||| | Sbjct 5521083 GGTCTTGACACCGTCGAGGAGAGGGGGGTTGGGGAGGGTGAACTTGTAGTCCTCAGCGAC 5521024 Query 225328 CTTCAGGTCGTAGTAAGATGCA---GCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 | || | | || ||| ||| |||||||| | | | || || ||||| Sbjct 5521023 GTCGAGCTGGAAG-AAG--GCACGGGCCTCGGGGACCATGTCGACAAACTTCTCGAGGTT 5520967 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444 ||| ||| | ||||||||| ||| || || |||| | || | ||| Sbjct 5520966 ACCGGGGTAACGCTTGAGCTTGAAGTTGTTGAGGTGGAGAAC----GTCGGTGATGGTGC 5520911 Query 225445 -GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 || ||||||| | |||||||| || || ||||| || | ||| | | || || || Sbjct 5520910 GGTTAAGGAAGTCCGAGTCGTGCGAGACCATGATCGAGGTACA-GGTGGTGAGCGAGGTG 5520852 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| ||||||||| | |||||| ||||||| |||||| || || ||||| || Sbjct 5520851 AGGTAGTCGATGAGCCAGGTGACGTTGACAACGTCCAAGTGGTTAGTGGGCTCGTCGAGG 5520792 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || ||||| || | | ||||||||||| | || | |||||||| ||||| || Sbjct 5520791 AGGAGAATGTCGGCCTTGAACAGGATGGCGCGGGCAAGGGCGAGCTTCATCTTCCAACCA 5520732 Query 225623 CCGGACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682 || || || || ||||| || ||||| | |||| |||||| | | ||| Sbjct 5520731 CCCGAAAGCGAACCGATCGAGTGCTTCTGCTTGTCGGCGTCGAAGCCGACCGACTCGAGG 5520672 Query 225683 GTCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGG-ACGAGAGGTA 225741 ||| ||| || |||||| | | || | || ||| | ||||| | || | | Sbjct 5520671 GTCGAGATGATCTCCTCGGGGGTG--GCAA--GGAGACGCT--TGTCGGCAAGA-ACCCA 5520619 Query 225742 ATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCG 225801 || | || ||| | | || |||| |||||||| | ||||| | || || Sbjct 5520618 GTCGACGATGGAGATGGACTCCTCCGAGCCGTCGATGTCGTGCTGGACGTAGAAGGTACG 5520559 Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861 || ||| || | |||||||||||||| | |||| || |||| || | ||||| Sbjct 5520558 GACCTGCGAGGGGTCGGGGAAGCCCTCGACCTGGTTGTTGACAATGGCGTTCATGAGGGT 5520499 Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921 |||||||| ||||| | || | ||| ||||| | | || ||||||| ||| Sbjct 5520498 CGACTTGCCCGAACCGTTACGGCCAAGGAGACCGTAGCGGTGGCCACGCTTGAGACGGAG 5520439 Query 225922 G--CGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACT-CGCAA--TCG 225976 | ||||| || || ||||||||| |||| ||||||||| ||||| | ||| | | Sbjct 5520438 GTTGGCGTG--GTGGAGCAGGATCTTGGCACCGTAGGCAAGGTTGAACTGCTCAATGTTG 5520381 Query 225977 CACAGGTCCTCACCCTCCTC 225996 || ||||||||||||||||| Sbjct 5520380 CAGAGGTCCTCACCCTCCTC 5520361 Score = 107 bits (118), Expect = 4e-18 Identities = 433/674 (64%), Gaps = 26/674 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||||||||||||| || ||| |||| ||||| | || |||||||| Sbjct 896009 TAACGCCACTGGATGTACTGGACGGCAGTCTTGTCGAGGTGAAGGTTGATGTGGTGGAAG 896068 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCC-CGAGT 225096 || |||||||| ||||| | | || | || ||||| || || ||| | | Sbjct 896069 GCGTGCTGGGCAACGTAACCGACACGGAGAGCCGGGTGCTTGTGGACCGAACCCTCCTGA 896128 Query 225097 CGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCC 225156 | || | ||| || ||||||| ||||||||| || | |||||||||||| |||||||| Sbjct 896129 GGAATG-GTCTCACCAGTGAGGAGCTTGATGAGGGTCGACTTGCCCGCACCGTTGGGGCC 896187 Query 225157 AATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGC--TGAAGATCTCA 225214 | | || | || || || | | || ||||| || || || || ||||| | Sbjct 896188 GACGATACCGACACGCGACGAGAGCGAAA---GCGAG--CAGGTGGCGTTGGAGATCG-A 896241 Query 225215 GGGCCAGTTTG-------GTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGTC 225267 ||||| | | ||| | || | || ||||| | ||||||||| Sbjct 896242 GGGCCGGGGAGCACCGGGGTAGGTGAAAGTGGCGTTCGAGAGCTTGAGGATGGCACGAGT 896301 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | ||| | ||| ||||| ||||| ||||| || | | | Sbjct 896302 GTTGGAGCGGACACCGACAAGGTTACCGGGGGGAGGGAAGGTAAACTTGATCGAGGTGGC 896361 Query 225328 CTTCAGGTCGTAGTAAGATGCAGCCTCGGGT---CGCTTTGCCACGAAAGCAGACAGGTT 225384 ||| |||||| || |||||||| |||| | || || || ||||| Sbjct 896362 AGCGAGGGTGTAGTACGACTTGGCCTCGGGGACACGCT---CGACAAACTTGGAGAGGTT 896418 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444 ||| ||| | | |||||| || ||||||| || | ||| | | || || Sbjct 896419 GCCGCGGTAGTAGGCGAGCTTC---TTGCTCTCGTAGTGGATAATGTCGGTACAGACGTT 896475 Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAG 225504 ||||||||| ||||||||||| || || || ||| | | || | | | ||| |||| Sbjct 896476 GTCAAGGAAACCAGAGTCGTGCGAGACGATCATGCAGGTCATGGTGGGGAGGTTGGTGAG 896535 Query 225505 GTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 || | ||||| || ||| | |||||||| |||||| ||||| ||||| || || Sbjct 896536 GTAGTTTTCAAGCCAAGCGACGGTCTGGACGTCCAAGTGGTTGGTAGGCTCGTCGAGGAG 896595 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 || ||||| || | || || ||||| || | || |||||||| ||||| || || Sbjct 896596 GAGAATGTCGGCGCCGATAAGCATGGCACGGGCAAGCTCGAGCTTCATCTTCCAACCACC 896655 Query 225625 GGACAGGGAGCCGA 225638 || || ||| ||| Sbjct 896656 CGAAAGCGAGGCGA 896669 >seq3 Length=3276928 Score = 131 bits (144), Expect = 3e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || |||||||| || || || Sbjct 2414505 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2414446 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| ||||| | || ||||| || || Sbjct 2414445 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2414386 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 2414385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 2414326 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || | |||||| || || ||||| ||| Sbjct 2414325 TCGAGGGTGATCGTCTTACCCGTAAGG 2414299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621973749640