Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 526 4e-144 seq5 343 3e-89 seq3 136 7e-27 seq10 87.8 3e-12 >seq2 Length=4282893 Score = 526 bits (582), Expect = 4e-144 Identities = 1082/1596 (68%), Gaps = 55/1596 (3%) Strand=Plus/Minus Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 || ||||| || || ||||| ||||| || || ||| || | | || ||||| Sbjct 3326636 ACGACCTGGAAGTCACCCGAGAGCACACGACGGGCGTAAAGCATCGAGGTGTAGGGCTCA 3326577 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| | ||| || ||||||| || ||||| |||||||||| || ||| Sbjct 3326576 AAGCACTCGTTCCAGCCAAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGCGCGACGAGC 3326517 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGG---ATGCGGAGTCTGAGCTCGTTCCAGTCCCAC 244270 || ||| | || |||||| ||| ||| | | ||||||| |||||||||| Sbjct 3326516 AGCGAGTTGCGGACACCGTGC---TGGGCAATGTTGGCACGGAGCTCGGTCCAGTCCCAG 3326460 Query 244271 ATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | | | | || | || || ||||||||| ||| ||| |||| | Sbjct 3326459 AGGTCGGTGGGGACA---CGGTT------CCACATGTCGGGCTGGAGCTTGCCCTGCGAG 3326409 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGG-GACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 | ||| ||||||||| | ||||| | || || | |||||||| || ||| | Sbjct 3326408 ATGGGCGAGCCCTCGTACGAGGGGTACTTGCCCTTCTC-CTGGGCCATCTCACACGAAGC 3326350 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 ||||| || |||| ||||||||||||||||||| | ||| | || || || | Sbjct 3326349 CTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTGAGGTTGAGCTCACGAGCAGCGGG 3326290 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 || |||||| | || | ||||||| ||||||| || ||||| || || | || Sbjct 3326289 CGAGTCGAAGGGCAGGCGGAGAGCCATGAAGGCGTCGGCGAGACCCTGGACACCAAGACC 3326230 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 || ||| | ||| ||| |||| ||| || | || | || |||||||| |||| | Sbjct 3326229 GACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCCTCCTGG-ACGGGGTAGTAGTTCTTGG 3326171 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCA---TGCGGACGACGTCGGCCAGCAGCTGAA 244625 || |||| || |||||| ||||| | ||| | | ||| | ||| || || Sbjct 3326170 TAATGACCTGGTCGAGGTTCTTGGTGACGACCTTGCAAATGTCGTGG---AGCTTCTTAA 3326114 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 |||||||| | | | ||| ||| || |||| | |||||| | Sbjct 3326113 AGTCGTACGACTGG---TTCTCA---ATGTCGA------CAAAGGCAGGGAGGGCAATCG 3326066 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| |||||||||||||| ||||| || | | ||||| || |||||| ||||||| Sbjct 3326065 AGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAATCTCAGTGCAGA 3326006 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| |||||||||| || |||||||| || || ||||||| |||| |||||||| Sbjct 3326005 GGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCT 3325946 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||||||||||||||| || || |||||| |||||| |||||| | | |||||| | Sbjct 3325945 TGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAGAGCT 3325886 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||| ||| ||||| ||||||| | |||||||| ||| |||| || Sbjct 3325885 TCTGGGCCTTGATGGTCTTGCGACCCTTGCCAGCACGCTCGTAGCTCTCGTAGAGGGTCT 3325826 Query 244926 CGAACTCGGGGCCCCAG---ACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGAC 244982 | ||||| || || || ||| | |||||||||||| || ||||||||||| Sbjct 3325825 CAAACTCCT---CCGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGGG 3325769 Query 244983 TCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGA 245042 |||| || ||| || ||| ||| | || ||||||||||||||||||||||||||| | || Sbjct 3325768 TCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGA 3325709 Query 245043 AGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||||| | || | ||| ||| ||| |||||| | ||| || | ||||||| Sbjct 3325708 ACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGTCAA 3325649 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 ||||||| ||||||||||||| | ||||| || | ||| ||||| |||||||| || | Sbjct 3325648 AGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCAC 3325589 Query 245163 CCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 ||||||| | | | ||||| || | | || ||| || | || || || ||| Sbjct 3325588 CCTGGTCGA----CGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGGACGATACCG 3325533 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || |||| |||||||| || ||||| | ||||||| | | | |||| |||| Sbjct 3325532 TTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCGCGAATGTTGTGGATGTGG 3325473 Query 245279 ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 | || | ||||| || ||||||||| |||||||| |||||| |||||| || Sbjct 3325472 AGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATA 3325413 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || ||| ||| ||||||| || || ||||| || |||| |||||| | ||| Sbjct 3325412 CCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGAGGG 3325353 Query 245399 CTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCG 245458 | | | |||||| || ||||| |||||| |||||||| || ||| | || | Sbjct 3325352 GTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGACATGAGGTTG 3325293 Query 245459 TACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGG 245518 || |||| ||| | ||| |||||||| |||||||| | |||| | ||| | Sbjct 3325292 TAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGATGGCGACACGCATAATC 3325233 Query 245519 GTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGA 245576 |||||||||| |||| | | || | ||| | ||| | ||| |||||||||| Sbjct 3325232 ATGTGCTGGGGACGCTCG--GCGACCTTGCCGTCGATGCGGAGGAGGTACGAGCGCTCGA 3325175 Query 245577 GCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGA 245636 | |||||||| |||||||| ||| |||||| || || | | ||| | ||||| Sbjct 3325174 GGGTCTTGAAGCCAAAGTAGTTGTACGAAAAGTCACGGTCGTAGATAATGGCCGAGTCGA 3325115 Query 245637 GTCTCTCGGCGTGCTTCTGACTGACCTCGTAAAACT 245672 | || ||||||||| ||||||||||| || Sbjct 3325114 GAACATCCTTGTGCTTCTGGACGACCTCGTAAACCT 3325079 >seq5 Length=2378914 Score = 343 bits (380), Expect = 3e-89 Identities = 508/708 (72%), Gaps = 15/708 (2%) Strand=Plus/Plus Query 42441 TCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTT 42500 ||||||||||| ||||| |||||||||| | | ||| ||||| ||| Sbjct 2242023 TCTGACGGCATTGTCAACGAGAACCTGGTCGAGCGTTTCTGTGGCGAGGTCCAGATTGCC 2242082 Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| ||| |||||||||||||| || |||||| | ||||| ||| ||| Sbjct 2242083 GAGGCCAAGACCTTTTACGGCTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTAC 2242142 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | || || |||| ||||||| || || | || ||| |||||||| || Sbjct 2242143 TCGCTCCTCATCGACACCTACATCCGTGACAACGCCCGCCGCAACTACCTGTTCAACGCG 2242202 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || || | || |||||||||||||||||||| |||||||| ||| |||||||| | | Sbjct 2242203 ATTGACAACATTCCCTGCATCAAGAAGAAGGCCGACTGGGCCCTCCACTGGATCTCG-GA 2242261 Query 42681 CCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 | || | | |||| | |||| | || | |||||| ||||||||||||| |||||||| Sbjct 2242262 CAAGAACTCGTCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTT 2242321 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCA 42798 ||||||| | || || |||||||||||||||||| || ||| || |||||||| |||| Sbjct 2242322 CTCGGGCTCGTTTGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGTCTCA 2242380 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCC 42858 ||||||| ||||| |||||| | |||||||| || || | |||||||||||||||| Sbjct 2242381 CCTTCTCCAACGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCC 2242440 Query 42859 TGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC--CGGGCCATCATCAC 42916 ||||| | ||||||| | | | ||| ||| || | || |||||| Sbjct 2242441 TGTTC---ACCCACCTCCGTCGCCGCCCCCACCCGGACACCATCAACAGG--ATCATCCG 2242495 Query 42917 GGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGG 42976 |||||||| | || ||| ||||||||||||| | | || |||||||| || | || Sbjct 2242496 CGAGGCCGTCGCCATTGAGCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGG 2242555 Query 42977 CATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GC 43034 ||||||| | | ||||||||| ||||||| ||| |||||||||| ||| || || || Sbjct 2242556 CATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGC 2242615 Query 43035 CAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATC 43094 | | || | | || ||| || || | |||||||||||||||||||| ||| Sbjct 2242616 C--CTCGGCAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATC 2242673 Query 43095 TCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTAC 43142 ||| || |||||||| ||||||| |||||| ||| ||| | | |||| Sbjct 2242674 TCGCTGCAGGGCAAGGCCAACTTCTTCGAGTCGCGTGTCTCGGCCTAC 2242721 >seq3 Length=3276928 Score = 136 bits (150), Expect = 7e-27 Identities = 224/318 (70%), Gaps = 9/318 (3%) Strand=Plus/Plus Query 42634 CCTGC-ATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||| |||| ||| |||||||||||||||||||| | ||| | |||||| | Sbjct 1613718 CCTGCCATCAGGAAAAAGGCGGACTGGGCGCTCAAGTATATCACG---CCCGACATGCCC 1613774 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||| || | || | || || | |||||||||||||||||||||||| | || Sbjct 1613775 TTCCGCACACGCCTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTTT 1613834 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGA 42811 || |||| |||||||||||| | | | ||| |||| |||| | || ||||| ||||| Sbjct 1613835 GCGGCCATTTTCTGGCTCAAG-AAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGA 1613893 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | || ||||| || | |||||||| ||| | || | | | ||| Sbjct 1613894 GCTCATCTCGCGCGATGAGGGTACCCACACCGACTTTGCGTGCTTGCTATAC---AACCA 1613950 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 ||||| |||| ||| ||||| ||| | | || |||| |||||||||| || Sbjct 1613951 CCTCACGCACCGCTGCTCCGAGGAGGAGGTTCACACAATTATCAGCGAGGCCGTGGCCAT 1614010 Query 42932 CGAGAAGGAGTTCCTCAC 42949 ||||||||||||||||| Sbjct 1614011 TGAGAAGGAGTTCCTCAC 1614028 >seq10 Length=834103 Score = 87.8 bits (96), Expect = 3e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 242952 CCGGACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGAT 243011 || ||| | ||||| | || || |||||||||||||||||||| | |||| ||| Sbjct 603726 CCAGACCGCACCACCTCCATTGGCCAGATGATCAACTCGTACCTCCAGTCCAAGTCCGAG 603785 Query 243012 CTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 |||||||| |||| | | |||||||| ||| | |||||||| |||||| Sbjct 603786 CTGGACGACCACGCCATCCACCTCCTCTTCGCTGCCAACCGCTGGGAA 603833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338763243120