Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 123 6e-23 seq2 123 6e-23 seq3 84.2 5e-11 >seq5 Length=2378914 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | |||||| || ||||| || | || || || |||||| Sbjct 2289082 TCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 2289023 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| |||| || ||||| Sbjct 2289022 ATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG 2288963 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||| || || ||||| || |||||||| ||||||| ||||||||| Sbjct 2288962 TCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACG 2288903 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2288902 AAGATCTGCAT 2288892 Score = 116 bits (128), Expect = 9e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | || || || ||||| || ||||||| | Sbjct 2288890 CCACCACGGAGACGAAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 2288831 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || |||||||| ||||| || | || Sbjct 2288830 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 2288771 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || || ||||| || || ||| || ||||| || || | || ||| || || Sbjct 2288770 ATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACGTTGTCGATGGTGTCAGACGACTCGAC 2288712 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| || ||||||||||| |||||||| Sbjct 2288711 CTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 2288664 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || || || | || || || ||||| || ||||||| Sbjct 2288662 CCACCGCGGAGACGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2288603 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| || |||||||| || || ||| Sbjct 2288602 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTG---GTCGGGG 2288546 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || |||||||| || ||| || ||||| || || | ||| ||| || Sbjct 2288545 GGAATACCCTCCTTGTCCTGGATCTT-GCTCTTGACGTTGTCAATGGTGTCGGACGACTC 2288487 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || ||||| ||||| ||||| ||||| || Sbjct 2288486 GACCTCGAGGGTGATGGTCTTGCCGGTGAG 2288457 >seq2 Length=4282893 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | || || || ||||| || ||||| | Sbjct 1078828 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1078887 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || | ||| Sbjct 1078888 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGG 1078947 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| |||| || ||||| || || | || || || || Sbjct 1078948 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACC 1079007 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| ||||| || || || ||||||||||| ||||||||| || Sbjct 1079008 TCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCATTCTG 1079058 Score = 84.2 bits (92), Expect = 5e-11 Identities = 188/280 (67%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 325319 TATATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCC 325378 || || || || || ||||| ||||||||||||||| | | || ||||||||| || Sbjct 1615698 TAGATGTAACGAGCGCTCGCAGCATCCTTACCACCCTGAATACGCGTACCGAACTGTCCG 1615757 Query 325379 TCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATG 325438 | || | | ||| | ||| ||||| |||||| | | ||| ||||| || ||| Sbjct 1615758 TTGGGGTCGAGCAGGTTAACGTTGTTGCTACCGACAAACTTCTGCGCAAGACCGACAATG 1615817 Query 325439 GTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTG 325498 ||| |||||| ||| || ||||| || || | | || | ||| ||||| | Sbjct 1615818 GTCATGAACAGAGACTGTTCACCGTGGTGGTATGCAGTGTTTTCGGAAACATAACCTCCA 1615877 Query 325499 AACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGC-TGAATATATCACTTT 325557 | ||| || ||||| | || || | | || ||||| ||||| | | | | || || Sbjct 1615878 AGCTGAGCGACCTTGATCTCCTTCTTGAGGTTACGCTT-AAAGCACGCAAAAAGAACCTT 1615936 Query 325558 CCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATG 325597 || ||| ||| |||| ||| || ||||||| |||||| Sbjct 1615937 GCGCTGACCAGGCTTGAGACCGTCGGCGACCGAGGGAATG 1615976 >seq3 Length=3276928 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | || || || ||||| || ||||| | Sbjct 2414505 CCACCACGCAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 2414446 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || | ||| Sbjct 2414445 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGG 2414386 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || ||||| || || | || || || || Sbjct 2414385 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACC 2414326 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||||| ||||||||||| || || || Sbjct 2414325 TCGAGGGTGATCGTCTTACCCGTAAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653840770086