Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 105 1e-17 seq2 95.1 3e-14 >seq5 Length=2378914 Score = 105 bits (116), Expect = 1e-17 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| |||||||||||| | | |||||| | |||||||| || || || |||||||| | Sbjct 2242547 GCTCATTGGCATGAACGCCAAGCTCATGTGCCAGTACATTGAGTTTGTCGCCGACCGTCT 2242606 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 || |||| || || | || || ||||| |||| |||||||| | ||||||||| Sbjct 2242607 GCTCGTCGCCCTCGGCAACGACAAGCTGTACGACTCGGCCAACCCCTTCGACTTTATGGA 2242666 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTC 243726 | | || ||||| || || || | ||||||||||| ||||||| Sbjct 2242667 GATGATCTCGCTGCAGGGCAAGGCCAACTTCTTCGAGTCGCGTGTC 2242712 >seq2 Length=4282893 Score = 95.1 bits (104), Expect = 3e-14 Identities = 357/552 (65%), Gaps = 6/552 (1%) Strand=Plus/Plus Query 297170 CCTTTGAATCCTCGATACCACGGTTTCATTTCGACGAGATCTTCTCCAGCAATCAATCGC 297229 || ||||| || || ||||||| |||| ||| | || || ||| |||| || Sbjct 1615428 CCCTTGAAACCACGGAACCACGGAGTCATGGGGACCATCTCCTCGCCACGCATCAGGCGG 1615487 Query 297230 TTCACGTTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTA 297289 | |||||| |||||||| || ||||| | ||||| ||| |||||||||| Sbjct 1615488 CGGAGGTTGTCCACGATGTCGACGGGGTTGTAGTTGGGGATCGAAGTACTCCAACCGGTA 1615547 Query 297290 CCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGT 297349 ||||| || | |||||| || || | | || | |||| || | || || Sbjct 1615548 CCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGAATTCAGGC 1615607 Query 297350 TCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAA 297409 ||||| | | || |||||| || || || ||||| || ||| | | | || Sbjct 1615608 TCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAGAGTGAAAG 1615667 Query 297410 ACC-TGTCGAGTC-TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCT 297467 | | ||| | ||| || ||| ||| ||| | || || || || ||||| ||||| Sbjct 1615668 ATCGTGTGG-GTCATGCGGGGAATGTTG-GTGTAGATGTAACGAGCGCTCGCAGCATCCT 1615725 Query 297468 TACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGC 297527 |||||||||| | | || ||||||||| || | || | | ||| | ||| |||| Sbjct 1615726 TACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAACGTTGTTGC 1615785 Query 297528 TTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGT 297587 | |||||| | | ||| ||||| || |||||| |||||| ||| || |||| Sbjct 1615786 TACCGACAAACTTCTGCGCAAGACCGACAATGGTCATGAACAGAGACTGTTCACCGTGGT 1615845 Query 297588 GATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCA 297647 | || || | | || | ||| ||||| | | ||| || ||||| | || || | | Sbjct 1615846 GGTATGCAGTGTTTTCGGAAACATAACCTCCAAGCTGAGCGACCTTGATCTCCTTCTTGA 1615905 Query 297648 AATTGCGCTTGAAAGC-TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACG 297706 || ||||| ||||| | | | | || || || ||| ||| |||| ||| || || Sbjct 1615906 GGTTACGCTT-AAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAGACCGTCGGCG 1615964 Query 297707 ACCGACGGAATG 297718 ||||| |||||| Sbjct 1615965 ACCGAGGGAATG 1615976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879477165950