Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq5 145 9e-30 seq3 116 4e-21 >seq2 Length=4282893 Score = 230 bits (254), Expect = 3e-55 Identities = 1105/1740 (64%), Gaps = 35/1740 (2%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 ||||||||||| || |||||||| || |||||||| | || | |||||||||| Sbjct 3326945 CGGAGGTAGTAGGCACCAGTCTTGAGACCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTG 3326886 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA- 113715 | || |||| | || | || | || ||| | || || || |||||||| Sbjct 3326885 AGCTGCGAGAACGAGGGGTTGGACAGGTGGATGTTGAGCGACTGCGACTGGTCGATGAAC 3326826 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 ||| ||||| || || || | ||||| ||| ||||| | | ||||| ||||| | Sbjct 3326825 GCG-CCACGGTCGGCGGCGAGGTCAATGACAGCCTTCTGCGAAACCTCCCAGACAGTCTT 3326767 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 ||||| | ||| | || || || || | || | |||||||| ||||||| Sbjct 3326766 GTAGATGGCCTTCAGCTCGTCGGGAATGTTGGGAATGTGCTGGATGGAACCACCCGAGGC 3326707 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 | ||||| | |||||| |||| ||||| || | || |||| || | ||| Sbjct 3326706 AATGATGAGGTTCTTCATCTCCTCGTCCCAGATGCCGAGGTTGATGAGGTCACGGAGGAG 3326647 Query 113896 --ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 | | | ||| || || ||||||| ||| || | || | | | Sbjct 3326646 CCAGGGGCA--GACGACCTGGAAGTCACCCGAGAGCACACGACGGGCGTAAAGCATCGAG 3326589 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATT-TGGGCGGTGGAGGCTGTGGGCAT 114012 ||||| |||||||||||||| || | |||||| | || | ||| ||||| |||||||| Sbjct 3326588 GTGTAGGGCTCAAAGCACTCGTTCC-AGCCAAGAATCTGCGAGGTCGAGGCAGTGGGCAT 3326530 Query 114013 GGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTC 114072 ||| || | ||| || ||| |||| ||| | | |||| | ||| || Sbjct 3326529 GGGCGCGACGAGCAGCGAGTTGCGGACACCGTGCTGGGCAATGTTGGCACGGAGCTCGGT 3326470 Query 114073 CCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 |||||| || | | | | | | |||||| || |||||| | || || || Sbjct 3326469 CCAGTCCCAGAGGTCGGTGGGGACACGGTTCCACATGTCGGGCTGGAGCTTGCCCTGCGA 3326410 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 | ||||| ||||| | | ||| ||||| ||| |||| || | || Sbjct 3326409 GATGGGCGAGCCCTCGTACGAGGGGTACTTGCCCTTCTCCTGGGCCATCTCACACGAAGC 3326350 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGC-GAGCATTCATTGCCTTGGCCTCGT 114251 |||||| || ||||| || || ||||| || || ||| || | | || || Sbjct 3326349 CTCGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTTGAGG-TTGAGCTCACGAGCAGCGG 3326291 Query 114252 CGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGC 114311 || || || | || ||| || || | || |||||||| |||||||| || | Sbjct 3326290 GCGAGTCGAAGGGCAGGCGGAGAGCCATGAAGGCGTCGGCGAGACCCTGGACACCAAGAC 3326231 Query 114312 CAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTAT 114371 | | ||||| || | ||| || || || ||||| || ||||| || | ||| | Sbjct 3326230 CGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCCTCCTGGACGGGGTAGTAGTTCTTGG 3326171 Query 114372 CGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAAT 114431 || ||| | || || |||||||| ||||| || || || ||||| | | | Sbjct 3326170 TAATGACCTGGTCGAGGTTCTTGGTGACGACCTTGCAAATGTCGTGGAGCTTCTTAAAGT 3326111 Query 114432 CAAA--ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACA 114489 | | |||| |||| | |||| | ||| ||||| || || || || || || Sbjct 3326110 CGTACGACTGGT--TCTCAATGTCGACAAAGGCAGGGAGGGCAATCGAGGCAAGGTTGCA 3326053 Query 114490 CACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTT 114549 || | ||| || | |||||| ||||| || || || | || || ||| Sbjct 3326052 GACGGCAACCTCGTCGGGCGACGAGTACTCGATAATCTCAGTGCAGAGGTTGGACGACTT 3325993 Query 114550 AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTA 114609 ||||| || | || || || || ||||| | ||| || |||||||| |||||| | Sbjct 3325992 GATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATGAA 3325933 Query 114610 TGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCA 114668 || || ||||| || |||| || ||| || || ||||| | || | | || | Sbjct 3325932 GGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGGCGAACCAGAGCTTCTGGGCCTTGA- 3325874 Query 114669 CAGTGGCGTTGGCTCGCCCCTCCTC------CTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 ||| ||| || |||| | |||||| | |||||||| ||||||| Sbjct 3325873 ---TGGTCTTG---CGACCCTTGCCAGCACGCTCGTAGCTCTCGTAGAGGGTCTCAAACT 3325820 Query 114723 CTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGAC 114782 | || | | || | ||| || || || | ||||| | ||| | ||| | || Sbjct 3325819 CCTCCGAGTGGACGTCGGCGAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTCAC 3325760 Query 114783 CACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCC 114842 | | |||| |||||||||||||||||||| ||||||||||| || |||| || || | Sbjct 3325759 CGTCGGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAACAGGTCAC 3325700 Query 114843 GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCG 114902 | ||| | || || | || || || |||| || | ||||| | || |||| Sbjct 3325699 GGGCACGAACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGTCAAAGACGTCCG 3325640 Query 114903 CGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG---ACCAGCCTGGTTTA 114959 ||||||| || || ||||| | || | | || || |||| |||||| | Sbjct 3325639 CGTGCCAGGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGA 3325580 Query 114960 CATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCAT 115019 | || | || ||||||| | |||| ||||| || | |||||| | || | || | Sbjct 3325579 CGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCATGGGGACGATACCGTTGGAGTAACCGT 3325520 Query 115020 TTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACC 115077 | || || ||| ||||| | | |||| | | | |||||||| | ||| ||||| Sbjct 3325519 TGGTACCGGCAATGTACGAGCCCT--TGGCGCGAATGTTGTGGATGTGGAGACCGATACC 3325462 Query 115078 CCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGA 115137 || || ||| ||||| || ||||| | |||| || ||||||| ||||| || || Sbjct 3325461 GCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTTGAGGGTGTCGTAGATACCGTCAATGGA 3325402 Query 115138 GTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTT 115197 ||| |||| | |||| ||||||||| |||||| || || || ||||| ||||| Sbjct 3325401 GTCGTCCTTCATGGCGACAAGGAAGCACGACGACATCTGGGGGTGAGGGGTACCGGCGTT 3325342 Query 115198 GAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAA 115257 ||||||||| || | ||||| | || || | ||||| | ||||||||| | Sbjct 3325341 GAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACGCTCCGACATGAGGTTGTAGGTCTCGAG 3325282 Query 115258 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 ||| | ||||| || ||||| |||||||| | ||| ||||||| ||||| ||||| Sbjct 3325281 GACCTTGTCAATGTTGTCACCGTGGATACCGATGGCGACACGCATAATCATGTGCTGGGG 3325222 >seq5 Length=2378914 Score = 145 bits (160), Expect = 9e-30 Identities = 347/519 (67%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 125752 CTTGCCGTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT 125811 |||| |||| || || ||| |||||||||||| | ||| || | || ||| | Sbjct 2242727 CTTGGAGTAGGCCGAGACACGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCAT 2242668 Query 125812 CTCCATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTG 125869 ||||||||| || || ||||| |||| | || |||| | || | | Sbjct 2242667 CTCCATAAAGTCGAAGGGGTTGGCCGAGTCGTACAGCTTGTCGTTGCCGAGGGCGAC--G 2242610 Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 || ||||| || | ||| |||||||||||| |||| || | |||||| || ||| Sbjct 2242609 AGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCAATG 2242550 Query 125930 AGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCAC 125988 || ||| ||| || ||||| || |||| ||| |||||| | ||||| || || | Sbjct 2242549 AGCG-ACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGAT 2242491 Query 125989 GATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGC 126048 ||| || ||||||||| || | || | |||| || ||| Sbjct 2242490 GATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGGC 2242431 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 ||| || |||||||||||||||||| |||||||| || || |||||| || || || Sbjct 2242430 AAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGG 2242371 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||||||||| |||||||| | |||||| || | ||| || |||||||||||||| || Sbjct 2242370 CATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATACC 2242311 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC---AAA 126225 ||| || || || || | ||||||||| ||||| || ||| || |||| | Sbjct 2242310 CTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA---CGAGTTCTTGTCCGAGAT 2242254 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 126264 ||| | | ||||| | ||||| |||| ||| || || Sbjct 2242253 CCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 2242215 >seq3 Length=3276928 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || |||| |||||| || || |||||||| || || ||||| || ||| Sbjct 1613932 GCAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGAGAATGTCAATCCG 1613873 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||||| || ||||| | ||||||||| || ||| || |||||||||||||| Sbjct 1613872 CGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCAAACGAGCCCGAGAAGAAGATG 1613813 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACG 126195 ||||| ||||| ||||| |||| ||| || Sbjct 1613812 CCCTCGACACAAGCGAAAGCAATGAGGCG 1613784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353323723960