Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 351 1e-91 >seq2 Length=4282893 Score = 351 bits (388), Expect = 1e-91 Identities = 1124/1722 (65%), Gaps = 54/1722 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| |||||| || || ||| |||||||||||| || || |||| | Sbjct 3325150 TACAACTACTTTGGCTTCAAGACCCTCGAGCGCTCGTACCTCCTCCGCATCGACGGCAAG 3325209 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || || || | ||||| ||||||||||| || ||||| || || Sbjct 3325210 GTCGCCGAGCGTCCCCAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAAC 3325269 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCC 93894 || || || | | | | || |||| ||| | | || ||| ||| Sbjct 3325270 ATTGACAAGGTCCTCGAGACCTACAACCTCATGTCGGA---GCGTTACTTTACGCACGCC 3325326 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | || ||||| |||||||| || ||||| || |||||||| ||||| ||||| | Sbjct 3325327 TCGCCCACCCTCTTCAACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTC 3325386 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | | |||| ||||||||| ||| || | ||||| ||||||| ||| || ||| Sbjct 3325387 GCCATGAAGGACGACTCCATTGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATC 3325446 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || ||||| || ||||| || | || |||| ||| || ||| Sbjct 3325447 TCCAAGACTGCTGGCGGTATCGGTCTCCACATCCACAACATTCGCGCCAAGGGCTCGTAC 3325506 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||||||||| || ||||||||| ||||||| |||||||| | || | | | Sbjct 3325507 ATTGCCGGTACCAACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCC 3325566 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | || |||||||| |||||||||||| | | | ||| | || || |||| ||| Sbjct 3325567 ACCGCTCGCTACGTCGACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTC 3325626 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 |||||||||||||||||||| | ||| | |||||||| |||||||||||||| || Sbjct 3325627 GAGCCCTGGCACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAG 3325686 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | ||||| |||||||| |||||| | || ||||| || ||||| || Sbjct 3325687 GAGGTTCGTGCCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGT 3325746 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||| || | ||||| || | || ||| || || ||||| || ||||| Sbjct 3325747 GTCGAGGCCGACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGAC 3325806 Query 94375 GT-TTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | | | | ||||| | | || | | ||||| ||||||| | Sbjct 3325807 GTCCACTCGGAGGAG-TTTGAGACCCTCTACGAGAGCTACGAGCGTGCTGGCAAGGGTCG 3325865 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 ||| || | || |||||| ||| ||| | || | ||| ||||| || Sbjct 3325866 CAAGACCATCAAGGCCCAGAAGCTCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGG 3325925 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 | |||| ||| | | ||||||| | | |||| ||||||| ||||||||||||||||| Sbjct 3325926 TGGCCCCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGG 3325985 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 |||||| || || || ||||| |||||| ||||||| | || || |||||| | Sbjct 3325986 TACCATCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCGCCCGACGAGGT 3326045 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 ||| || || ||||| | ||| || ||| | | || || ||| || | || Sbjct 3326046 TGCCGTCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGT-CGACATTGAGA-AC--- 3326100 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGT---CTTGA 94729 | | |||| ||| | || |||| || || || |||| | || | || Sbjct 3326101 --CAG--TCGTACGACTTTAAGAAGCTCCACGACATTTGC---AAGG-TCGTCACCAAGA 3326152 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 |||| || ||| || |||||||| ||||||||||| |||||| ||||| ||| Sbjct 3326153 ACCTCGACCAGGTCATTACCAAGAACTACTACCCCGTCCAGGAGGCTCGCAACTCGAACA 3326212 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 || || || ||| |||| | || ||||||||| |||| ||||| | || | | Sbjct 3326213 TGCGCCACCGCCCCGTCGGTCTTGGTGTCCAGGGTCTCGCCGACGCCTTCATGGCTCTCC 3326272 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATTTGAACATATTCGAAAGCA 94906 | ||||||| |||||| | | ||| || || | || | || || ||||| | || Sbjct 3326273 GCCTGCCCTTCGACTC-GCC--CGCTGCTCGTGAGCTCAACCTCAAGATCTTCGAGACCA 3326329 Query 94907 TTTATTACGGGGC-CATGAAACAATCCGT-CCACTTGGCCAGATCGGACGGCGGGCCA-C 94963 | || ||| || | || | | ||| | ||||| | | | |||| | Sbjct 3326330 TCTACCACGCTGCTCTCGAGGC--TTCGTGTGAGATGGCC----CAGGAGAAGGGCAAGT 3326383 Query 94964 ACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGG---G 95020 || |||| | || |||||| | ||||||| | ||| |||| | ||| Sbjct 3326384 ACCCCTCGTACGAGGGCTCGCCCATCTCGCAGGGCAAGCTCCAGCCCGACATGTGGAACC 3326443 Query 95021 GTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACG 95080 |||| ||| | | || | |||||| | || || || | || | | |||| Sbjct 3326444 GTGT---CCCCACCGACCTCTGGGACTGGACCGAGCTCCGTGCCAACATTGCCCAGCACG 3326500 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 |||| ||| ||||||| || || ||||||||||| ||||| || ||||||| |||| Sbjct 3326501 GTGTCCGCAACTCGCTGCTCGTCGCGCCCATGCCCACTGCCTCGACCTCGCAGATTCTTG 3326560 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 || ||||||| || || |||| |||||| | | ||| | | || |||||| | | Sbjct 3326561 GCTGGAACGAGTGCTTTGAGCCCTACACCTCGATGCTTTACGCCCGTCGTGTGCTCTCGG 3326620 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || |||| ||| || | ||||| || ||||| | || || | |||| Sbjct 3326621 GTGACTTCCAGGTCGTCTGCCCCTGGCTCCTCCGTGACCTCATCAACCTCGGCATCTGGG 3326680 Query 95261 GTGACAAGGTCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCG 95316 || || | ||||||| | ||| || | || ||| ||||| |||| || Sbjct 3326681 ACGAGGAGATGAAGAACCTCATCATTGCCTCGGG----TGGTTCCATCCAGCACATTCCC 3326736 Query 95317 CAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTG 95376 | || || || || | ||||| |||||||||| || |||||| | ||||| | Sbjct 3326737 AACATTCCCGACGAGCTGAAGGCCATCTACAAGACTGTCTGGGAGGTTTCGCAGAAGGCT 3326796 Query 95377 ATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 | | |||| ||| |||| ||| || | |||||| |||| Sbjct 3326797 GTCATTGACCTCGCCGCCGACCGTGGCGCGTTCATCGACCAG 3326838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722971190520