Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5 132 5e-26 seq2 84.2 2e-11 >seq5 Length=2378914 Score = 132 bits (146), Expect = 5e-26 Identities = 296/440 (67%), Gaps = 7/440 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 |||||||| | | ||||| ||| |||||||| | || || || ||| ||||| Sbjct 2242278 GCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCGTTTGCG 2242337 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | || | |||||||| || || ||| ||||||| | Sbjct 2242338 TCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTC 2242397 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG-ACGCGCGT 52570 || ||||| ||||| || || ||||| |||||||| |||||| | || || ||| Sbjct 2242398 ATCTCGCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTGTTCACCCACCTCCGT 2242457 Query 52571 GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGA 52630 ||| | ||||||| ||| || || || ||||| || || || || Sbjct 2242458 CGCCGCCCCC----ACCCGGACACCATCAACAGGATCATCCGCGAGGCCGTCGCCATTGA 2242513 Query 52631 AAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCAT 52690 ||||||| | || | ||| || || || ||| | ||||||||||| || ||| Sbjct 2242514 GCAGGAGTTCCTCACCGACGCCCTCCCCGTGTCGCTCATTGGCATGAACGCCAAGCTCAT 2242573 Query 52691 GTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA-AAGT 52749 |||| ||||||| |||||||| || || |||||| | || ||| |||| | | ||| Sbjct 2242574 GTGCCAGTACATTGAGTTTGTCGCCGACCGTCTGCTCGTCGCCCTC-GGCAACGACAAGC 2242632 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | | || | ||| || || || |||||| | | || ||||| |||||||| ||| Sbjct 2242633 TGTACGACTCGGCCAACCCCTTCGACTTTATGGAGATGATCTCGCTGCAGGGCAAGGCCA 2242692 Query 52810 ACTTTTTCGAGAAGCGAGTC 52829 |||| |||||| ||| ||| Sbjct 2242693 ACTTCTTCGAGTCGCGTGTC 2242712 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| ||| | || | || | | | |||||||| |||||||||||||| Sbjct 2289119 GCCGCCACGCAGACGGAGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGA 2289060 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||||||| || || |||| |||| || ||||| ||||| ||||| Sbjct 2289059 GAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGG 2289000 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | |||||||| |||||| || Sbjct 2288999 GATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGAC 2288940 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || || |||| || || || || |||||||| Sbjct 2288939 CTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 2288892 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| || || |||| | Sbjct 2288857 GACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCA 2288798 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | || | Sbjct 2288797 AAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTC-CTGAATCTTGCTCTTGAC 2288739 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | |||||| ||||| | ||| | || || || || || || | Sbjct 2288738 GTTG-TCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCT 2288680 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 2288679 TGACGAAGATCTGCAT 2288664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 2288629 GACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 2288570 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| || || ||||| || ||||| ||| || || | Sbjct 2288569 AAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTGACG 2288510 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGA 138571 | || | |||||||| |||||| ||||||| Sbjct 2288509 TTGTCAATGGTGTCGGACGACTCGACCTCGA 2288479 >seq2 Length=4282893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| Sbjct 1078861 GACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 1078920 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || || || || ||||| ||| || || | Sbjct 1078921 AAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACG 1078980 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||||| || | || || || || || || || Sbjct 1078981 TTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTG 1079040 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1079041 ACGAAGATCTGCAT 1079054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262170478640