Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 201 1e-46 seq5 143 3e-29 seq3 111 2e-19 seq7 100 3e-16 >seq2 Length=4282893 Score = 201 bits (222), Expect = 1e-46 Identities = 678/1047 (65%), Gaps = 29/1047 (3%) Strand=Plus/Minus Query 116248 TCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCG 116307 || |||||||| |||||||| || || | ||||| || | ||| || || || ||||| Sbjct 3326255 TCGGCGAGACCCTGGACACCAAGACCGACGGGGCGGTGGCGCATGTTCGAGTTGCGAGCC 3326196 Query 116308 GTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 116367 || ||||| || | ||| | || ||| | || || |||||||| ||||| Sbjct 3326195 TCCTGGACGGGGTAGTAGTTCTTGGTAATGACCTGGTCGAGGTTCTTGGTGACGACCTTG 3326136 Query 116368 GTGATTTCATGAAGCTTTTCGTAATCAAA--ACTGCGAGTCTCTTCATTGACATACTTAG 116425 || || || ||||| | | || | |||| |||| | |||| | || Sbjct 3326135 CAAATGTCGTGGAGCTTCTTAAAGTCGTACGACTGGT--TCTCAATGTCGACAAAGGCAG 3326078 Query 116426 GAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAA 116485 | ||||| || || || || || || || | ||| || | |||||| |||| Sbjct 3326077 GGAGGGCAATCGAGGCAAGGTTGCAGACGGCAACCTCGTCGGGCGACGAGTACTCGATAA 3326018 Query 116486 TTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGT 116545 | || || || | || || ||| ||||| || | || || || || ||||| | || Sbjct 3326017 TCTCAGTGCAGAGGTTGGACGACTTGATGGTACCGAGGTGCTGCTGGTTCGACTTGGAGT 3325958 Query 116546 TACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAG 116605 | || |||||||||||||| | || || ||||| || |||| || ||| || | Sbjct 3325957 TGGCGGCGTCCTTGTAGAGCATGAAGGGGCCACCAGTCTCGGTCTGGGCCTCGAGGATGG 3325898 Query 116606 CCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTC------CTCG 116658 | ||| | | || | | || | ||| ||| || |||| | |||| Sbjct 3325897 CGAACCAGAGCTTCTGGGCCTTGA----TGGTCTTG---CGACCCTTGCCAGCACGCTCG 3325845 Query 116659 TACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAG--CCTCTGAGAGCCCTGGTGCCT 116716 || | |||||||| ||||||||| || | | | | || | ||| || || || Sbjct 3325844 TAGCTCTCGTAGAGGGTCTCAAACTCCTC--CGAGTGGACGTCGGCGAGGCCGGGGCACT 3325787 Query 116717 TATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTG 116776 | || || | ||| | ||| | ||| | |||| || ||||||||||||||||| | Sbjct 3325786 CGGCGGGGCACATGAGGGTCCAGTCACCGTCGGCCTCGACACGCTTCATGAAGAGGTCGG 3325727 Query 116777 GGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGAC 116836 |||||||||| || |||| || || || ||| | || || | || || || | Sbjct 3325726 GGATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTCCTTGCCGTGGTTCTTGC 3325667 Query 116837 GCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACC 116896 ||| || | ||||| | || ||||||||||| || || ||||| | || | | | Sbjct 3325666 GCAGGTCAAGGAAGTCAAAGACGTCCGCGTGCCAGGGCTCGAGGTAGATGGCAAAGGCAC 3325607 Query 116897 CCTTGCGACG---ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCA 116953 | ||| |||| |||||| || || | || || || | | |||| |||| Sbjct 3325606 CGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGGCATCGTAGGCGCGGAGCA 3325547 Query 116954 TTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTGTTGGCTCT 117011 | || | |||||| | || | || || || || ||| ||||| | | |||| | Sbjct 3325546 TGGGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCT--TGGCGCG 3325489 Query 117012 GACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGT 117071 | | ||||||||| | ||| ||||| || || ||| ||||| || ||||| | | Sbjct 3325488 AATGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGATCTGGGCGCAGGTCTT 3325429 Query 117072 GAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGA 117131 ||| || ||||||| || || || ||||| |||| | |||| |||||||| ||| Sbjct 3325428 GAGGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCGACAAGGAAGCACGACGA 3325369 Query 117132 CATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC 117191 ||| || || || ||||| |||||||||||||| || | ||||| | || || Sbjct 3325368 CATCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAGGCGTGCGTAAAGTAACG 3325309 Query 117192 TTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGAT 117251 | ||||| | ||||||||| | ||| | ||||| || ||||| |||||||| Sbjct 3325308 CTCCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAATGTTGTCACCGTGGATACCGAT 3325249 Query 117252 TGAGACCCGCATAAACATGTATTGGGG 117278 | ||| ||||||| ||||| ||||| Sbjct 3325248 GGCGACACGCATAATCATGTGCTGGGG 3325222 >seq5 Length=2378914 Score = 143 bits (158), Expect = 3e-29 Identities = 310/459 (68%), Gaps = 6/459 (1%) Strand=Plus/Minus Query 127225 CTTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT 127284 |||| |||| || ||| ||| |||||||||||| | ||| || | || ||| | Sbjct 2242727 CTTGGAGTAGGCCGAGACACGCGACTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCAT 2242668 Query 127285 CTCCATAAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTG 127342 ||||||||| || || ||||| |||| | || |||| | || | | Sbjct 2242667 CTCCATAAAGTCGAAGGGGTTGGCCGAGTCGTACAGCTTGTCGTTGCCGAGGGCGAC--G 2242610 Query 127343 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 127402 || ||||| || | ||| |||||||||||| |||| || | |||||| || ||| Sbjct 2242609 AGCAGACGGTCGGCGACAAACTCAATGTACTGGCACATGAGCTTGGCGTTCATGCCAATG 2242550 Query 127403 AGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTAC 127461 || ||| ||| || ||||| || |||| ||| ||||||| | || || || || | Sbjct 2242549 AGCG-ACACGGGGAGGGCGTCGGTGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGAT 2242491 Query 127462 GATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGC 127521 ||| || || |||||| || | || | |||| || || Sbjct 2242490 GATCCTGTTGATGGTGTCCGGGTGGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGGC 2242431 Query 127522 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGG 127581 ||| || |||||||||||||||||| |||||||| || || |||||| ||||| || Sbjct 2242430 AAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGG 2242371 Query 127582 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCC 127641 ||||||||| |||||||| | |||||| || | ||| ||||| ||||||||||| || Sbjct 2242370 CATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCCGAGAAGAAGATACC 2242311 Query 127642 CTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 ||| || || || || | |||||||||||||| || Sbjct 2242310 CTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGA 2242272 >seq3 Length=3276928 Score = 111 bits (122), Expect = 2e-19 Identities = 193/275 (70%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 127391 TTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACA 127450 || |||||||| || |||||| || || || || |||| ||||||||||| |||| Sbjct 1614061 TTGATACCGATAAGCGCACATGGCAGAGCATCGGTGAGGAACTCCTTCTCAATGGCCACG 1614002 Query 127451 GCTTCCCGTACGATGGCGTGAATAGTGTCCACCCCAGGTCTAT--TGCGTAAAGTC-TTG 127507 || || | | || | ||||| ||| || | | | ||||| | || ||| Sbjct 1614001 GCCTCGCTGATAATTGTGTGAACC---TCCTCCTCGGAGCAGCGGTGCGTGAGGTGGTTG 1613945 Query 127508 AAGAGTTC-CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGA 127566 | || ||| ||||| || |||| |||||| || || |||||||| || || || Sbjct 1613944 TATAGCAAGCAC-GCAAAGTCGGTGTGGGTACCCTCATCGCGCGAGATGAGCTCGTTTGA 1613886 Query 127567 GAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCC 127626 ||| || || |||||||||| || ||||| | ||||||||| || ||| ||||| Sbjct 1613885 GAATGTCAATCCGCGCATGAGACCGCGTTTCTTGAGCCAGAAAATGGCCGCAAACGAGCC 1613826 Query 127627 AGAGAAGAAGATCCCCTCCACACACGCGAACGCAA 127661 ||||||||||| ||||| ||||| ||||| |||| Sbjct 1613825 CGAGAAGAAGATGCCCTCGACACAAGCGAAAGCAA 1613791 >seq7 Length=1599831 Score = 100 bits (110), Expect = 3e-16 Identities = 276/419 (66%), Gaps = 7/419 (2%) Strand=Plus/Minus Query 12692 GGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCG 12751 || ||| | ||| || || || || || || | |||||| |||| || | ||| || Sbjct 731420 GGCGATGTGACGGTCGAAACGGCCGGGACGCATGAGGGCAGCGTCGAGAACATCGGGACG 731361 Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || | |||| || || || | || | || |||||| |||||||| || Sbjct 731360 GTTGGTACCGGCGAGAACGACAATATGCTCCTTGGTAGAGAAGCCGTCCATCTCGACCAG 731301 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTG----C 12867 || || |||| ||| ||||| || || || || | || || |||| || | Sbjct 731300 GATCTGGTTGAGGGTCGTCTCACGCTCGTCGTT-GCCGCCAAACTGTCCGCCCTTACCAC 731242 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGG 12927 | ||| ||||| |||||||| ||||| || || | ||| || || ||| | | | Sbjct 731241 GGGCCTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTG 731182 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 | | || | || ||||| | | |||||||||||| ||||||||||| || || | Sbjct 731181 CTGTCGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACT 731122 Query 12988 TGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 13046 || | | ||| | | |||||| || |||| ||||| || |||| ||| || Sbjct 731121 CGGAACCCG-ACACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGC 731063 Query 13047 AGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || ||||| || || || || |||| || | ||||||||| || ||| ||||||| Sbjct 731062 AGAGTCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACC 731004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506916252920