Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5 145 1e-29 seq2 136 6e-27 >seq5 Length=2378914 Score = 145 bits (160), Expect = 1e-29 Identities = 184/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||||||||| ||||||||| ||| || |||||||| || ||||||| ||||||||| Sbjct 2242444 AACAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAG 2242385 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | |||| || ||||||| || ||| |||||||| || |||| |||||| | || Sbjct 2242384 AAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGACGCAAACGAGCCC 2242325 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || ||||| ||||| ||||| ||||| || | ||| | ||| |||| || | ||| Sbjct 2242324 GAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGCAAACGACGAGTTC 2242265 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCG 160153 |||| | |||| |||||| || |||||||| |||||| || ||| || Sbjct 2242264 TTGTCCGAGATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGGAATGTTGTCA 2242205 Query 160154 ACGGCGTTAAACA 160166 | ||||| |||| Sbjct 2242204 ATCGCGTTGAACA 2242192 >seq2 Length=4282893 Score = 136 bits (150), Expect = 6e-27 Identities = 354/534 (66%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| |||||| ||| |||| ||||| |||||||| | || | || Sbjct 3325743 CTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAACAGGTCACGGGCACGAACCTCCTC 3325684 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || ||| || ||| | | | ||| |||||||| ||||| | Sbjct 3325683 CTTGCCGTGGTTCTTGCGCAGGTCAAGG-AAGTCAAAGACGTCCGCGTGCCAGGGCTCGA 3325625 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | || || || | |||||| ||||||||||| || ||||| | | Sbjct 3325624 GGTAGATGGCAAAGGCACCGGGGCGCTTGTTACCACCCTGGTCGACGTAGCGAGCGGTGG 3325565 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 | | | | | || ||||| || || | |||||||| | ||||| || | | ||| Sbjct 3325564 CATCGTAGGCGCGGAGCATGGGGACGATACCGTTGGAGTAACCGTTGGTACCGGCAATGT 3325505 Query 205404 CCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGA 205463 |||||| | || | | |||| |||| || || ||||||| | ||||| || Sbjct 3325504 ACGAGCCCTTGGCGCGAATGTTGTGGATGTGGAGACCGATACCGCCAGCAGTCTTGGAGA 3325445 Query 205464 TCTGGGCGCA-CTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTC 205522 |||||||||| ||||| || ||| |||||| || | ||||| |||||| || | Sbjct 3325444 TCTGGGCGCAGGTCTTG-AGGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATGGCG 3325386 Query 205523 ACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 || || ||||||| | || || || ||| || |||| |||||| ||||| | Sbjct 3325385 ACAAGGAAGCACGACGACATCTGGGGGTGAGGGGTACCGGCGTTGAAGAGGGTGGGCGAG 3325326 Query 205583 GCGTGGCTGAAGCGCTTCTCGCTCAAACA----CCTGTAGGTCTCCAGCACGCTCTCCAG 205638 ||||| | ||| | ||||| ||| |||||||||| || || | || | Sbjct 3325325 GCGTGCGTAAAG----TAACGCTCCGACATGAGGTTGTAGGTCTCGAGGACCTTGTCAAT 3325270 Query 205639 ATCGAAGCCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTC 205692 | | ||||| ||||| ||||||| | ||| | | ||| || || | ||| Sbjct 3325269 GTTGTCACCGTGGATACCGATGGCGACACGCATAATCATGTGCTGGGGACGCTC 3325216 Score = 111 bits (122), Expect = 3e-19 Identities = 323/486 (66%), Gaps = 10/486 (2%) Strand=Plus/Minus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||||||| | ||||| | | | | || ||||| || ||||| || Sbjct 3326978 GTGAACTGGATGGCGTTGGCAGCAGGACGGGTGCGGAGGTAGTAGGCACCAGTCTTGAGA 3326919 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTT-GCTCACGTTGGGGTCGGCCAT 203967 || || ||| ||||| | |||||| || | || | | ||| ||||| || || Sbjct 3326918 CCGCGCTTCCAGCCGTAGAAGTGCATCGAGGTGAGCTGCGAGAACGA-GGGGTTGGACAG 3326860 Query 203968 GTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGA 204026 ||| ||||| || ||||| ||||||||||| | |||| || || ||||| | | | Sbjct 3326859 GTGGATGTTGAGCGACTGCGACTGGTCGATGAACG-CGCCACGGTCGGCGGCGAGGTCAA 3326801 Query 204027 TAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC--TCTGGTGTGTTGAGG 204084 | | | ||||||||||| |||||| || |||||| | | | | || | | || | || Sbjct 3326800 TGACAGCCTTCTGCGAAACCTCCCAGACAGTCTTGTAGATGGCCTTCAGCTC-GTCG-GG 3326743 Query 204085 CACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCT 204143 | | | | || ||| || || || ||| || | || || |||||| Sbjct 3326742 AATGT-TGGGAATGTGCTGGATGGAACCACCCGAGGCAATGATGAGGTTCTTCATCTCCT 3326684 Query 204144 CCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 | |||| ||||| | |||| || || || | || |||| || || ||| |||| Sbjct 3326683 CGTCCCAGATGCCGAGGTTGATGAGGTCACGGAGGAGCCAGGGGCAGACGACCTGGAAGT 3326624 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || || ||||| | |||| | | || | |||| | || || || |||||| Sbjct 3326623 CACCCGAGAGCACACGACGGGCGTAAAGCATCGAGGTGTAGGGCTCAAAGCACTCGTTCC 3326564 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 ||| | |||||| | ||| ||| ||||||||||| || | |||||| |||||||| | Sbjct 3326563 AGCCAAGAATCTGCGAGGTCGAGGCAGTGGGCATGGGCGCGACGAGCAGCGAGTTGCGGA 3326504 Query 204324 CACCGT 204329 |||||| Sbjct 3326503 CACCGT 3326498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154832240720