Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5 134 3e-26 seq2 134 3e-26 seq3 129 1e-24 >seq5 Length=2378914 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || ||||||||||| |||| ||||||||| | | ||| | || || Sbjct 2288875 AGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCC 2288816 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||| || ||||||||||| || ||| || || ||| Sbjct 2288815 TCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 2288756 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || |||| ||| || ||| Sbjct 2288755 TGAATCTTGCTCTTGACGTTGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTC 2288696 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 2288695 TTGCCGGTGAGGGTCTTGACGAAGATCTG 2288667 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||||||||||||||| |||| ||||||||| | | || | || || Sbjct 2288647 AGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 2288588 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| ||||||||||||||||| || ||| || || ||| Sbjct 2288587 TCGAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCC 2288528 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | ||||| ||| Sbjct 2288527 TGGATCTTGCTCTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 2288468 Query 199598 TTACCCGTGAG 199608 || || ||||| Sbjct 2288467 TTGCCGGTGAG 2288457 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| || | ||||||||| | | || | || || Sbjct 2289103 AGGACCAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCC 2289044 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| ||| || || || ||| Sbjct 2289043 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCC 2288984 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | |||||| | | || || || | || |||||| Sbjct 2288983 TGGATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTC 2288924 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 2288923 TTGCCGGTCAAGGTCTTGACGAAGATCTG 2288895 >seq2 Length=4282893 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 1078843 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 1078902 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||||||||||||||| || || || || ||| Sbjct 1078903 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 1078962 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 1078963 TGGATCTTCGACTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTC 1079022 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || Sbjct 1079023 TTGCCCGTGAGCGTCTTGACGAAGATCTG 1079051 >seq3 Length=3276928 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 2414490 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 2414431 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||||||||| ||||||||||| || || || || ||| Sbjct 2414430 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 2414371 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || || | ||||||||| Sbjct 2414370 TGGATCTTGGACTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTC 2414311 Query 199598 TTACCCGTGAG 199608 |||||||| || Sbjct 2414310 TTACCCGTAAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921041117479