Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 152 6e-32 seq2 145 9e-30 seq3 118 1e-21 >seq5 Length=2378914 Score = 152 bits (168), Expect = 6e-32 Identities = 151/193 (78%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| ||||||||||||||||| || Sbjct 2288855 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 2288796 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || |||||||||| ||||| |||||| ||| Sbjct 2288795 GATCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGA-CGT 2288737 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| ||| || || |||| ||| ||||| ||||| || || || || | Sbjct 2288736 TGTCGATGGTGTCAGACGACTCGACCTCCAGCGTAATGGTCTTGCCGGTGAGGGTCTTGA 2288677 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2288676 CGAAGATCTGCAT 2288664 Score = 134 bits (148), Expect = 2e-26 Identities = 147/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || |||| |||||||||||||||||||| Sbjct 2289083 CTCCTTCTGAATGTTGTAGTCTGAGAGCGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2289024 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||||| || | | |||||||||| ||||||| ||||| ||| Sbjct 2289023 GATCAGGCGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 2288965 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || || | || || || ||||| |||| || || | Sbjct 2288964 TGTCAATGGTGTCGGACGACTCGACCTCGAGAGTAATCGTCTTGCCGGTCAAGGTCTTGA 2288905 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 2288904 CGAAGATCTGCAT 2288892 Score = 132 bits (146), Expect = 5e-26 Identities = 134/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| |||| |||||||||||||||||||| Sbjct 2288627 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2288568 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||||||| |||||| |||||| ||| Sbjct 2288567 AATGAGACGCTGCTGGTCGGGGGGAATACCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 2288509 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | |||||| ||| || || || | |||||||| ||||| || || Sbjct 2288508 TGTCAATGGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 2288457 Score = 107 bits (118), Expect = 2e-18 Identities = 120/158 (76%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 46416 TGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT 46475 |||||||||| || || || |||| |||||||||||||||||||| || | ||||||| Sbjct 2288279 TGTAGTCGGAAAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCT 2288220 Query 46476 GGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG 46534 |||||| || | || |||||||||| ||||||| ||||| ||| | | | ||||| Sbjct 2288219 GGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGTTGTCGATAGTGTCC 2288161 Query 46535 CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 || || || || | |||||||| ||||| || || Sbjct 2288160 GAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAG 2288123 >seq2 Length=4282893 Score = 145 bits (160), Expect = 9e-30 Identities = 152/197 (77%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 1078863 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1078922 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | || |||||||||| ||||||| ||||| ||| Sbjct 1078923 GATGAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGA-CGT 1078981 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| || || || || | |||||||| |||||||| ||||| || | Sbjct 1078982 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGCGTCTTGA 1079041 Query 46581 CAAAGATTTGCATTTTG 46597 | ||||| |||||| || Sbjct 1079042 CGAAGATCTGCATTCTG 1079058 >seq3 Length=3276928 Score = 118 bits (130), Expect = 1e-21 Identities = 131/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| |||||||||||||||||||| Sbjct 2414470 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 2414411 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 2414410 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 2414352 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAG 46572 | | | ||||| || ||||| || | ||||| || || ||||| || Sbjct 2414351 TGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTAAG 2414300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238138577240