Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 262 4e-65 seq2 147 2e-30 seq3 102 8e-17 >seq5 Length=2378914 Score = 262 bits (290), Expect = 4e-65 Identities = 473/684 (69%), Gaps = 12/684 (2%) Strand=Plus/Minus Query 132627 CTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGC 132686 ||| || || || | || |||| || || || | | |||||| || ||||||||||| Sbjct 2242703 CTCGAAGAAGTTGGCCTTGCCCTGCAGCGAGATCATCTCCATAAAGTCGAAGGGGTTGGC 2242644 Query 132687 TGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTC 132743 | || ||| ||||| |||||| || |||||||||| | |||||| || ||||| Sbjct 2242643 CGAGTCGTACAGCTTGTCGTTGCCGA---GGGCGACGAGCAGACGGTCGGCGACAAACTC 2242587 Query 132744 GATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGG 132802 ||||| || ||||| | || || | | | || | || ||| || || || |||| Sbjct 2242586 AATGTACTGGCACATGAGCTTGGCGTTCATG-CCAATGAGCGACACGGGGAGGGCGTCGG 2242528 Query 132803 TGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGC 132862 |||| || ||||| |||||||| || ||| || ||| | | | ||| | Sbjct 2242527 TGAGGAACTCCTGCTCAATGGCGACGGCCTCGCGGATGATCCTGTTGATGGTGTCCGGGT 2242468 Query 132863 TCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGT 132922 || || | | || |||||| | ||| ||||||||| || | ||||||| Sbjct 2242467 GGGGGCGGCGACGGAGGTGGGTGAACAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGT 2242408 Query 132923 CCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCC 132982 | | || ||||| |||||| ||| || | ||||||||||| ||||| || ||||||| Sbjct 2242407 CACGCGAGATGAGCTCGTTGGAGAAGGTGAGACCGGGCATGAGACCGCGCTTCTTGAGCC 2242348 Query 132983 AAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCA 133042 | || |||| || || |||||| ||||||| ||||||||||| || || || | | Sbjct 2242347 AGAAGATGGACGCAAACGAGCCCGAGAAGAAGATACCCTCGACGGCGGCAAAGGCGATGA 2242288 Query 133043 GGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 | |||||| | |||| | | ||| | ||||||| | || ||||| |||||||| | Sbjct 2242287 GACGCTCGGCAAACGACGAGTTCTTGTCCGAGATCCAGTGGAGGGCCCAGTCGGCCTTCT 2242228 Query 133103 CTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC-TCTTCCG-AGGA 133160 |||| ||| || || | || || ||||| ||| | | |||| | | || | Sbjct 2242227 TCTTGATGCAGGGAATGTTGTCAATCGCGTTGAAC--AGGTAGTTGCGGCGGGCGTTGTC 2242170 Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 ||| | |||||||||||||||| ||| || | || ||||| | ||||||||| ||| Sbjct 2242169 ACGGATGTAGGTGTCGATGAGGAGCGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGAT 2242110 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 || |||||||||||| | |||||| | | ||| || || | |||||||||||| Sbjct 2242109 CTGGAAGCCGTAAAAGGTCTTGGCCTCGGCAATCTGGACCTCGCCACAGAAACGCTCGAC 2242050 Query 133281 CAGATTTTCGTTGACGATGCCGTC 133304 ||| || |||||||| |||||||| Sbjct 2242049 CAGGTTCTCGTTGACAATGCCGTC 2242026 Score = 143 bits (158), Expect = 3e-29 Identities = 152/197 (77%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| ||||| ||||||||| |||| |||||| | |||||| | | | |||| | | Sbjct 2288457 CTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCGACACCATTGACAACG--TCA 2288514 Query 38324 AGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382 ||| || |||| ||||| ||||| |||||| ||||||| ||||| ||||||| ||| | Sbjct 2288515 AGAGCAAGATCCAGGACAAGGAGGGTATTCCCCCCGACCAGCAGCGTCTCATTTTCGCCG 2288574 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442 |||| ||||| || |||| |||||||| ||||||||||||||| ||||| |||| | Sbjct 2288575 GCAAGCAGCTCGAGGACGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACTC 2288634 Query 38443 TGCATTTGGTGCTGCGT 38459 | || | || || ||| Sbjct 2288635 TCCACCTTGTCCTTCGT 2288651 Score = 122 bits (134), Expect = 9e-23 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||| || | || |||||| | | Sbjct 2288664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATTACGCTGGAGGTCGAGTCGTCT 2288723 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | ||||| ||||| |||||| | |||| Sbjct 2288724 GACACCATCGACAACG--TCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACC 2288781 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 2288782 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACA 2288841 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| |||| ||||| | || || ||| Sbjct 2288842 ACATCCAGAAGGAGTCGACCCTGCACCTTGTCCTTCGT 2288879 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || || || |||| |||||| | || Sbjct 2288892 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACGATTACTCTCGAGGTCGAGTCGTCC 2288951 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || || |||| ||||| ||||| || || ||||||| Sbjct 2288952 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGTATCCCTCCCGACCA 2289010 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| || || ||| |||||||| Sbjct 2289011 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACGCTCTCAGACTACAA 2289070 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||| || ||||| |||| || || |||| || ||| || | ||||||| Sbjct 2289071 CATTCAGAAGGAGTCGACCCTCCACCTGGTCCTCCGTCTGCGTGGCGGCC 2289120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 133309 GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGC 133365 || || || ||||| || ||||||| ||| || | ||||||||||||||| | | Sbjct 2241968 GCCGCAAAGAAGGCGAGGACGTGCTCGATAAAGTAGCGCTCGTTGTCGTTGAGCTTGTTG 2241909 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 ||||||||| || ||| | |||| | ||||||| ||||||| |||||||||| | Sbjct 2241908 TCCCAGTCGTGCAGGTCGGCAGCGAGGTTGATCTCCTCGGCGGTCCAGAACGACGCCTGG 2241849 Query 133426 GCTTTTTTGTACAT 133439 || || |||||||| Sbjct 2241848 GCCTTCTTGTACAT 2241835 >seq2 Length=4282893 Score = 147 bits (162), Expect = 2e-30 Identities = 157/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || |||||||||||||| ||||||||| |||| |||||| || | Sbjct 1079055 AATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTC 1078996 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || || |||| ||||| ||||| || ||| | |||| Sbjct 1078995 GGACACCATCGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACC 1078937 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | ||| ||||| ||||| || |||| |||||||| ||||||| Sbjct 1078936 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACA 1078877 Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||| ||||| |||| || || Sbjct 1078876 ACATCCAGAAGGAGTCGACCCTCCA 1078852 >seq3 Length=3276928 Score = 102 bits (112), Expect = 8e-17 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 || ||||| || || |||||| |||| || ||| | | |||| | | | |||| | || Sbjct 2414300 CTTACGGGTAAGACGATCACCCTCGAGGTGGAGTCTTCGGACACCATCGACAACG-TCAA 2414358 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || |||| ||||| ||||| || ||| | ||||| ||||| ||||| | ||| || Sbjct 2414359 GTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTCGCCGG 2414418 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| |||||||| |||||||||||||| ||||| |||| || Sbjct 2414419 CAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCT 2414478 Query 38444 GCA 38446 || Sbjct 2414479 CCA 2414481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172568670080