Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3 338 8e-88 seq2 185 1e-41 >seq3 Length=3276928 Score = 338 bits (374), Expect = 8e-88 Identities = 809/1215 (67%), Gaps = 20/1215 (2%) Strand=Plus/Minus Query 6923 GGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGT 6982 |||||||| || || || || |||| || | || ||||| | ||||| | ||| Sbjct 393072 GGGGTCATGATGCCGCCAGCGGTCTCGATACCCATCGAGAGAGGGGCAACGTCGAGGAGG 393013 Query 6983 AACAGGTCTTGAACAGATTC---GTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTC 7039 | ||||| ||| | || | || ||||| | | ||| | ||| ||||| | Sbjct 393012 AGGAGGTCCTGAGTGGCCTCCGAGGTC---TCACCGTTGAGGATAGAGGCCTGGACGGCG 392956 Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| ||||| ||||| |||||||| |||| || | || ||| | || Sbjct 392955 GCACCGTAGGCGACGGCCTCGTCGGGGTTGATCGAGCGGTTGGGCTCGCGGCCGCTGAAC 392896 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | | | || || || ||||| || || || || ||||| | || || Sbjct 392895 ATGTCCGAGACAAGCTTCTGGATCTTGGGGATACGAGTAGAGCCGCCGACGAGGACAATC 392836 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || || || | || || || ||||| ||||| || || || ||||| || ||||| Sbjct 392835 TCGTTGACGCTGGACTTGTCAATCTTCGAGTCACGGAGGACCTTCTCGACGGGCTCCATG 392776 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | |||| || || ||||| || || |||||||| || || || ||| Sbjct 392775 GTCGAACGGAAGAGGTCCTGGCAGAGCTCCTCGAAGCGGGCACGGGTGATCGAGGTGTAG 392716 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| |||||| | | ||| || || || |||| || || || | || || | Sbjct 392715 AAGTCAATGCCGTCAAAGAGCGAGTCGATCTCGATGGAGGTCTGAGCAGCAGACGAGAGA 392656 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || ||||| || || || || | |||||| |||||||| | ||| || Sbjct 392655 GTGCGCTTGGCACGCTCGCAAGCGGTGCGGAGACGACGGAGGGCACGGGCGTTGGACGAG 392596 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 | || ||||| | || | || || || | | ||| || | || ||| | | Sbjct 392595 AGGTCCTTCTTGTTCTTCCTCTTGAATTCCTGAACGAAATGGTTGACCAGGCGGTTG--- 392539 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || ||||| | ||| || || || || || || ||||| || ||||| || Sbjct 392538 TCAAAGTCCTCGCCACCGAGGTGGGTGTCACCAGCAGTGGCCTTGACCTCGAAGATGCCC 392479 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || || || || ||||||||||| |||||||| ||||| ||| Sbjct 392478 TCCTCGATGGTGAGGAGAGACACGTCGAAGGTACCACCACCGAGGTCAAAGATGAGGACG 392419 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | || | ||||| ||||| ||||| |||||||| || || || || || Sbjct 392418 TTCTTCTCACCCTCGCTCTTCTTGTCGAGGCCGTAGGCGATAGCGGCGGCGGTAGGCTCG 392359 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || || ||||| || || || | || || || || || || || Sbjct 392358 TTGATGATACGGAGGACGTCGAGGCCGGCGATGGTGCCAGCGTCCTTGGTAGCCTGACGC 392299 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 ||||| ||||| |||||||| ||||| || ||||| || | | ||| | |||||| Sbjct 392298 TGCGAGTCGTTGAAGTAGGCAGGGACAGTGACGACGGCCTTGGAGACGGTGCCACCGAGG 392239 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || | || ||| ||| | || ||||| || |||||||| || | | Sbjct 392238 TAGGCCTCAGCAACCTCACGCATCTTGATCAGGACCATAGAAGAAATCTCCTCGGGGGAG 392179 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 |||| || || || ||| | || || | || || || | || | Sbjct 392178 AACTCCTTGGTCTCGCCGCGGTACTCCACCTGGATGTACGGCTT---GGTTGCCTTGTCA 392122 Query 7877 ATAACCTTATACGACCAAT-CTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || ||||| | | ||| | ||| || || ||||||| ||| | ||||| | Sbjct 392121 ATGACCTTGAAGGGCCAGTGCTTGCA-GTCAGACTGGACCTCAGCGTCTGCGAACTTGCG 392063 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||||| || ||||| || || || || ||||| | ||| ||||| || |||||||| Sbjct 392062 ACCGATGAGGCGCTTCGCGTCGAAGACGGTGTTATAGGGATTCATAGCGACCTGGTTCTT 392003 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||| ||||| ||||| || || || || |||||||| || ||||| || Sbjct 392002 GGCGGCGTCACCGATGAGACGCTC---CGAGTCGGTGAAAGCGACGTAGGAGGGGGTGGT 391946 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || || || || |||||||| || ||||||||| |||| || Sbjct 391945 GCGGTTACCCTGGTCGTTGGCGATGATCTCAACGCGGTCATTCTGCCAGACGGCGACACA 391886 Query 8116 CGAATACGTTGTTCC 8130 || || || || || Sbjct 391885 GGAGTAGGTAGTACC 391871 >seq2 Length=4282893 Score = 185 bits (204), Expect = 1e-41 Identities = 329/478 (69%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| ||||| |||||||| ||| | |||| ||| ||| | ||| | ||| || Sbjct 1531241 TCCTCGAAACGAGCACGGGTGATGTTCGACGAGAAGTCAGTGCCCTGGTAGAGCGAGTCG 1531182 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 | || | || || || | ||| || | || ||||| || |||||||| |||| Sbjct 1531181 ACCTCGACAGTGGTCTGGGTGACCGACGAGAGGGTGCGCTTGGCACGCTCACAGGCCGAA 1531122 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | |||||| || ||||| |||| | || || || ||| | || || || ||| Sbjct 1531121 CGGAGACGACGGAGAGCACGGGGGTCGTCCGAGATGTCAAGCTTGTTCTTGCGCTTGAAC 1531062 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || | |||||| |||||| | ||||| || |||||||| | ||| || || Sbjct 1531061 TCGGCCTTGAAGTGCTCAAGGAGGGTGTTGTCGAAGTCCTCACCACCAAGGTGGGTGTCA 1531002 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || ||||| || ||||| | |||| ||| || || | | ||||||||| || Sbjct 1531001 CCAGCGGTGGCCTTGACGGCGAAGACACCACCAGTGATCGAGAGGAGCGAAACATCGAAG 1530942 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG--TTCTTATCGA 7604 ||||||||||| ||||| || ||||| |||||| | || || ||| | |||| |||| Sbjct 1530941 GTACCACCACCGAGGTCGAAGATGAGGACGTTCTTCTCCTC--CTTCGACTTCTGGTCGA 1530884 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAG 7664 | ||||| || || || || || || || || || || ||||| ||| || ||||||| Sbjct 1530883 GGCCGTAGGCAATGGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTCAAGGCCAG 1530824 Query 7665 CAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 |||| | | || || || || || | || ||||| ||||| |||||||| ||||| Sbjct 1530823 CAATGGCACCGGCGTCCTTGGTGGCAAGACGCTGCGAGTCGTTGAAGTAGGCGGGGAC 1530766 Score = 105 bits (116), Expect = 8e-18 Identities = 208/306 (68%), Gaps = 14/306 (5%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC- 7515 || || || |||||||| | ||| || || || ||||| ||||| || |||| ||| Sbjct 1608658 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTCGACTTGACCTCGAAGACACCC 1608599 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATG---AG 7572 | || || | | | | ||| ||||| || ||||||||||| ||||| | | | | Sbjct 1608598 TTCTGCA-TCTCGAGGATCGAGACATCGAAGGTACCACCACCAAGGTCGTAGACGGCAAT 1608540 Query 7573 TACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 ||| || |||| |||| || |||||||| || | || || || || || Sbjct 1608539 GACGGCCGAGTCGT---------TCTTGTCAAGACCGTAGGCAAGGGCGGCAGCGGTGGG 1608489 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || | ||| || || ||||||||||| || | || || || || || || Sbjct 1608488 CTCGTTGATGACACGGAGGACGTCAAGGCCAGCAATGGTACCGGCGTCCTTGGTAGCCTG 1608429 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || ||||| ||||| |||||||| ||||| || | ||| || | | |||| |||| || Sbjct 1608428 ACGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCTGCTTGACGGTCTTGCC 1608369 Query 7753 GAGATA 7758 ||| || Sbjct 1608368 GAGGTA 1608363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132506251080