Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 206 3e-48 seq5 150 2e-31 seq7 102 1e-16 seq3 95.1 2e-14 >seq2 Length=4282893 Score = 206 bits (228), Expect = 3e-48 Identities = 680/1054 (65%), Gaps = 25/1054 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| ||||| ||||||||||| || || | ||||| || Sbjct 3325222 CCCCAGCACATGATTATGCGTGTCGCCATCGGTATCCACGGTGACAACATTGACAAGGTC 3325281 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| || || | ||||| | || ||||||||| Sbjct 3325282 CTCGAGACCTACAACCTCATGTCGGAGCGTTACTTTACGCACGCCTCGCCCACCCTCTTC 3325341 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||||| ||||| || |||||| | || | ||||| || Sbjct 3325342 AACGCCGGTACCCCTCACCCCCAGATGTCGTCGTGCTTCCTTGTCGCCATGAAGGACGAC 3325401 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 || || | || || |||| ||| |||| || ||||| ||||| ||| ||||| Sbjct 3325402 TCCATTGACGGTATCTACGACACCCTCAAGACCTGCGCCCAGATCTCCAAGACTGCTGGC 3325461 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACAA 111909 |||||||| | |||||||| | | | ||||| | |||||| || ||||| | Sbjct 3325462 GGTATCGGTCTCCACATCCACAACATTCGCGCCAAG--GGCTCGTACATTGCCGGTACCA 3325519 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | ||| | || | ||||| | || ||||| |||| | | ||||| || ||||| | Sbjct 3325520 ACGGTTACTCCAACGGTATCGTCCCCATGCTCCGCGCCTACGATGCCACCGCTCGCTACG 3325579 Query 111970 TAAACCAAGCTGGGCGTCGCAAG------GGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| | |||| || | | || |||| || ||||| |||| Sbjct 3325580 TCGACCAGGGTGG---TAACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCCTGGC 3325636 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 ||||||| || | || |||||||| |||| ||||| || | ||||||| || Sbjct 3325637 ACGCGGACGTCTTTGACTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTTCGTG 3325696 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 ||| || || |||| ||| |||||||| || || |||||||||||| | || |||| Sbjct 3325697 CCCGTGACCTGTTCTACGCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCCG 3325756 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || | ||| | ||| | || || | | || ||||| ||| |||| | | | Sbjct 3325757 ACGGTGACTGGACCCTCATGTGCCCCGCCGAGTGCCCCGGCCTCGCCGACGTCCACTCGG 3325816 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAG------GAAGAAAGTCGGGCGACTGCGA 112257 |||||||||| |||||||| | |||||| | | |||| ||| | Sbjct 3325817 AGGAGTTTGAGACCCTCTACGAGAGCTACGAGCGTGCTGGCAAGGGTCGCAAGACCATCA 3325876 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || |||| || | ||| || || ||| || | || |||||||||||| | Sbjct 3325877 AGG-CCCAGAAGC-----TCTGGTTCGCCATCCTCGAGGCCCAGACCGAGACTGGTGGCC 3325930 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | ||||| ||||| |||||| ||| ||| || || || | | ||| | Sbjct 3325931 CCTTCATGCTCTACAAGGACGCCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGTACCA 3325990 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 ||||| ||||||||||| || || || | || | | || ||| || | Sbjct 3325991 TCAAGTCGTCCAACCTCTGCACTGAGATTATCGAGTACTCGTCGCCCGACGAGGTTGCCG 3326050 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || || || ||||| | ||| || |||| || | | | Sbjct 3326051 TCTGCAACCTTGCCTCGATTGCCCTCCCTGCCTTTGTCGACATTGAGAACCAGTCGTACG 3326110 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || |||||||| || || ||||| || ||||| || || ||| Sbjct 3326111 ACTTTAAGAAGCTCCACGACATTTGCAAGGTCGTCACCAAGAACCTCGACCAGGTCATTA 3326170 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || | |||||||| || ||||| || || || ||| | ||||| || | | Sbjct 3326171 CCAAGAACTACTACCCCGTCCAGGAGGCTCGCAACTCGAACATGCGCCACCGCCCCGTCG 3326230 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 |||| |||||||| |||||||| || | ||||| Sbjct 3326231 GTCTTGGTGTCCAGGGTCTCGCCGACGCCTTCAT 3326264 Score = 116 bits (128), Expect = 5e-21 Identities = 326/494 (66%), Gaps = 10/494 (2%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||||||||| || | ||| || ||||| |||||||||| || |||| ||||| Sbjct 1615540 AACCGGTACCGATACCGTCGGCACCATTGACGAGCACCATGGGGACGGTGGGCAGGTAGA 1615599 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | || ||||| ||| | ||||| ||| | | |||||||||| | || || | Sbjct 1615600 ATTCAGGCTCGATGCTCTGGCCATCATCAACAAGGTAGTTGAGAAGCGCATTGTCGGCAG 1615659 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTG--AGCTTTGTAAAGATATACCTCGTTTGAGA 176016 | ||||||| | ||| || | | | | || || |||| || | | | Sbjct 1615660 AGTGAAAGATCGTGTGGG--TCATGCGGGGAATGTTGGTGTAGATGTAACGAGCGCTCGC 1615717 Query 176017 CGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGAT 176076 ||||||||||||||| | ||||||||| ||||| || || || || || || | Sbjct 1615718 AGCATCCTTACCACCCTGAATACGCGTACCGAACTGTCCGTTGGGGTCGAGCAGGTTAAC 1615777 Query 176077 ATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC--T 176134 ||||| ||| | | | | ||| | |||||| ||| | |||||| | Sbjct 1615778 GTTGTTGCTACCGACAAACTTCTGCGCAAGACCGACAAT--GGTCATGAACAGAGACTGT 1615835 Query 176135 TCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCAT 176193 |||||||||||||| ||| | || || | ||| | || |||| ||| || || || || Sbjct 1615836 TCACCGTGGTGGTATGCAGTGTTTTCGGAAACATA-ACCTCCAAGCTGAGCGACCTTGAT 1615894 Query 176194 CTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAG 176253 ||| | |||||| || | || || || | | ||||||||| || ||||||||| Sbjct 1615895 CTCCTTCTTGAGGTTACGCTTAAAGCACGCAAAAAGAACCTTGCGCTGACCAGGCTTGAG 1615954 Query 176254 ACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGTC 176313 ||| || || | | || ||||| | |||||||| |||| | ||| || Sbjct 1615955 ACCGTCGGCGACCGAGGGAATGGAACGAATGTTGTCCGCCATGGAGAAGAGAATGAGCTC 1616014 Query 176314 CTTGTGTACAAAGT 176327 ||||| ||||||| Sbjct 1616015 CTTGTTGACAAAGT 1616028 >seq5 Length=2378914 Score = 150 bits (166), Expect = 2e-31 Identities = 132/162 (81%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || ||||| ||||| ||| |||| ||||| || ||||||||||||||||| || || Sbjct 2242272 TCGTTTGCCGAGCGTCTCATCGCCTTTGCCGCCGTCGAGGGTATCTTCTTCTCGGGCTCG 2242331 Query 102231 TTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 || |||| | || | |||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 2242332 TT-TGCGTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAA 2242390 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||| ||||| ||||||||||| |||||| || ||||| Sbjct 2242391 CGAGCTCATCTCGCGTGACGAGGGTCTCCACACCGACTTTGC 2242432 >seq7 Length=1599831 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 16055 CTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 |||||| || || |||||||| || || |||| |||||| || ||| | | || Sbjct 731237 CTTTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTGCTGT 731178 Query 16115 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 16174 | || || || || |||||| ||| || ||||| ||||||||||| || || | | Sbjct 731177 CGCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACTCGGA 731118 Query 16175 GGCGGAACATTGGATG-AAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 16233 | || || | | | ||||| || || | ||||| ||| |||| ||| || |||| Sbjct 731117 ACCCGA-CACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGCAGAG 731059 Query 16234 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||||| ||||| || |||| |||| |||||| || ||||||||||| || Sbjct 731058 TCTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACC 731004 >seq3 Length=3276928 Score = 95.1 bits (104), Expect = 2e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GCTAT 102241 || ||| | || || || ||||| ||||| ||||||||||| || || || ||| || || Sbjct 1613784 CGCCTCATTGCTTTCGCTTGTGTCGAGGGCATCTTCTTCTCGGGCTCGTT-TGCGGCCAT 1613842 Query 102242 TTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTC 102301 || ||||||||||| || |||||||||| || | ||||| |||||||| ||||| Sbjct 1613843 TTTCTGGCTCAAGAAACGCGGTCTCATGCGCGGATTGACATTCTCAAACGAGCTCATCTC 1613902 Query 102302 TCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || || ||||| |||| || |||||| Sbjct 1613903 GCGCGATGAGGGTACCCACACCGACTTTGCG 1613933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742112906640