Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apiotrichum_20porosum_20[genbank_20GCA_5F001600255.1_202016-03-01] 37 sequences; 25,989,348 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 158 1e-33 seq5 104 3e-17 >seq7 Length=1599831 Score = 158 bits (174), Expect = 1e-33 Identities = 347/510 (68%), Gaps = 19/510 (4%) Strand=Plus/Minus Query 11502 ACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGC 11561 ||| |||||||| || || || | || ||| | || |||| |||| |||||| ||| | Sbjct 731411 ACGGTCGAAACGGCCGGGACGCATGAGGGCAGCGTCGAGAACATCGGGACGGTTGGTACC 731352 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAGAAGCTG 11618 ||| | || ||||| | ||| ||| ||| |||||||| || || | ||| Sbjct 731351 GGCGAGAACGACAAT---ATGCTCCTTGGTAGAGAAGCCGTCCATCTCGACCAGGATCTG 731295 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGA----ACGCTTCT 11674 ||||| ||| |||||||| |||||| | || || | ||| ||| || Sbjct 731294 GTTGAGGGTCGTCTCACGCTCGTCGTTGCCGC-CAAACTGTCCGCCCTTACCACGGGCCT 731236 Query 11675 TACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTT 11734 | ||||| ||||||||||| ||||| || | ||| || || || | ||| ||| Sbjct 731235 TTCCGACCGCGTCAATCTCGTCGATAAAGATGATGCAGGGGGCATTCTTCCTTGC-TGTC 731177 Query 11735 -CGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 |||| || || || |||||| || || ||||| || |||||||| ||||| | | Sbjct 731176 GCGAACAGGTCGCGCACACGCGAGGCACCGACACCGACAAACATCTCGACGAACTCGGAA 731117 Query 11794 GCAGAACACTGAATG-AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || ||| ||| | ||||| || || | |||||| || |||| || || ||||| Sbjct 731116 CCCGA-CACCGAAAGGAAGGGCACCTTGGCCTCACCGGCAGTGGCCTTGGCAAGCAGAGT 731058 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTT 11910 |||||| ||||| || | || | || | ||| |||||||| ||||||||||| ||| Sbjct 731057 CTTACCGGTACCGGGAGGGCCCGAAAGGATGGCACCACGGGGAATCTTGGCACCGAGCTT 730998 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCG 11970 | ||| || |||| ||||||||| | |||| |||| || ||||||||||| Sbjct 730997 C--TCGTACTTCTGGGGCTCCTTGAGGAACTTGACAAACTCCATAATCTCCTCCTTGGCC 730940 Query 11971 GAGTCGATACCCTCAACATCGGTGAAACGA 12000 ||| ||||| | || ||| ||| ||| Sbjct 730939 TCGTCCATACCGGCCACGTCGCGGAAGCGA 730910 >seq5 Length=2378914 Score = 104 bits (114), Expect = 3e-17 Identities = 159/221 (72%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||||| || |||| || || Sbjct 2242433 GGCAAAGTCGGTGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTGGAGAAGGTGAGACC 2242374 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAAC-TTCCAGAAAAGAAGA 119613 |||||||| || | ||||| ||||| ||||||| || |||| || || ||||||| Sbjct 2242373 GGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGG-ACGCAAACGAGCCCGAGAAGAAGA 2242315 Query 119614 TGCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---G 119669 | ||||| || ||| || |||| |||||||| || ||| | |||| |||||| | Sbjct 2242314 TACCCTCGACGGCGGCAAAGGCGATGAGACGCTCGGC-AAACGACGAGTTCTTGTCCGAG 2242256 Query 119670 AACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGG 119710 | ||| | ||| ||||||| |||||| || |||||||| Sbjct 2242255 ATCCAGTGGAGGGCCCAGTCGGCCTTCTTCTTGATGCAGGG 2242215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975727598600